Package: sigminer.prediction 0.2.0

sigminer.prediction: Train and Predict Cancer Subtype with Keras Model based on Mutational Signatures

Mutational signatures represent mutational processes occured in cancer evolution, thus are stable and genetic resources for subtyping. This tool provides functions for training neutral network models to predict the subtype a sample belongs to based on 'keras' and 'sigminer' packages.

Authors:Shixiang Wang [aut, cre]

sigminer.prediction_0.2.0.tar.gz
sigminer.prediction_0.2.0.zip(r-4.7-any)sigminer.prediction_0.2.0.zip(r-4.6-any)sigminer.prediction_0.2.0.zip(r-4.5-any)
sigminer.prediction_0.2.0.tgz(r-4.6-any)sigminer.prediction_0.2.0.tgz(r-4.5-any)
sigminer.prediction_0.2.0.tar.gz(r-4.7-any)sigminer.prediction_0.2.0.tar.gz(r-4.6-any)
sigminer.prediction_0.2.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
sigminer.prediction/json (API)

# Install 'sigminer.prediction' in R:
install.packages('sigminer.prediction', repos = c('https://shixiangwang.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/shixiangwang/sigminer.prediction/issues

On CRAN:

Conda:

kerasmutational-signaturesprostate-cancersigminer

2.60 score 8 stars 2 scripts 1 mentions 7 exports 145 dependencies

Last updated from:0572bfc65f. Checks:7 ERROR, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develERROR204
source / vignettesOK266
linux-releaseERROR201
macos-releaseERROR130
macos-oldrelERROR85
windows-develERROR131
windows-releaseERROR154
windows-oldrelERROR144
wasm-releaseOK173

Exports:batch_modeling_and_fittingcopy_modellist_trained_modelsload_trained_modelmodeling_and_fittingprepare_datatidy

Dependencies:abindbackportsbase64encBiobaseBiocGenericsBiocManagerbootbroomcarcarDatacaretclasscliclockclustercodetoolscolorspaceconfigcorrplotcowplotcpp11data.tableDerivdiagramdigestDNAcopydoBydoParalleldplyre1071farverforeachforecastFormulafracdifffurrrfuturefuture.applygenericsggplot2ggpubrggrepelggsciggsignifglobalsgluegowergridBasegridExtragtablehardhathereipredisobanditeratorsjsonlitekerasKernSmoothlabelinglatticelavalifecyclelistenvlme4lmtestlubridatemaftoolsmagrittrMASSMatrixMatrixModelsmgcvminqaModelMetricsmodelrnlmenloptrNMFnnetnumDerivparallellypbkrtestpheatmappillarpkgconfigplyrpngpolynompROCprocessxprodlimprogressrproxypspurrrquantregR6rappdirsrbibutilsRColorBrewerRcppRcppArmadilloRcppEigenRcppTOMLRdpackrecipesreformulasregistryreshape2reticulateRhtslibrlangrngtoolsrpartrprojrootrstatixrstudioapiS7scalesshapesigminerSparseMsparsevctrsSQUAREMstringistringrsurvivaltensorflowtfautographtfrunstibbletidyrtidyselecttimechangetimeDatetzdburcautf8vctrsviridisLitewhiskerwithryamlzeallotzoo