Package: sigminer.prediction 0.2.0

sigminer.prediction: Train and Predict Cancer Subtype with Keras Model based on Mutational Signatures

Mutational signatures represent mutational processes occured in cancer evolution, thus are stable and genetic resources for subtyping. This tool provides functions for training neutral network models to predict the subtype a sample belongs to based on 'keras' and 'sigminer' packages.

Authors:Shixiang Wang [aut, cre]

sigminer.prediction_0.2.0.tar.gz
sigminer.prediction_0.2.0.zip(r-4.7)sigminer.prediction_0.2.0.zip(r-4.6)sigminer.prediction_0.2.0.zip(r-4.5)
sigminer.prediction_0.2.0.tgz(r-4.6-any)sigminer.prediction_0.2.0.tgz(r-4.5-any)
sigminer.prediction_0.2.0.tar.gz(r-4.7-any)sigminer.prediction_0.2.0.tar.gz(r-4.6-any)
sigminer.prediction_0.2.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
sigminer.prediction/json (API)

# Install 'sigminer.prediction' in R:
install.packages('sigminer.prediction', repos = c('https://shixiangwang.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/shixiangwang/sigminer.prediction/issues

On CRAN:

Conda:

kerasmutational-signaturesprostate-cancersigminer

2.60 score 8 stars 2 scripts 1 mentions 7 exports 145 dependencies

Last updated from:0572bfc65f. Checks:7 ERROR, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64ERROR219
source / vignettesOK230
linux-release-x86_64ERROR221
macos-release-arm64ERROR158
macos-oldrel-arm64ERROR104
windows-develERROR156
windows-releaseERROR250
windows-oldrelERROR152
wasm-releaseOK143

Exports:batch_modeling_and_fittingcopy_modellist_trained_modelsload_trained_modelmodeling_and_fittingprepare_datatidy

Dependencies:abindbackportsbase64encBiobaseBiocGenericsBiocManagerbootbroomcarcarDatacaretclasscliclockclustercodetoolscolorspaceconfigcorrplotcowplotcpp11data.tableDerivdiagramdigestDNAcopydoBydoParalleldplyre1071farverforeachforecastFormulafracdifffurrrfuturefuture.applygenericsggplot2ggpubrggrepelggsciggsignifglobalsgluegowergridBasegridExtragtablehardhathereipredisobanditeratorsjsonlitekerasKernSmoothlabelinglatticelavalifecyclelistenvlme4lmtestlubridatemaftoolsmagrittrMASSMatrixMatrixModelsmgcvminqaModelMetricsmodelrnlmenloptrNMFnnetnumDerivparallellypbkrtestpheatmappillarpkgconfigplyrpngpolynompROCprocessxprodlimprogressrproxypspurrrquantregR6rappdirsrbibutilsRColorBrewerRcppRcppArmadilloRcppEigenRcppTOMLRdpackrecipesreformulasregistryreshape2reticulateRhtslibrlangrngtoolsrpartrprojrootrstatixrstudioapiS7scalesshapesigminerSparseMsparsevctrsSQUAREMstringistringrsurvivaltensorflowtfautographtfrunstibbletidyrtidyselecttimechangetimeDatetzdburcautf8vctrsviridisLitewhiskerwithryamlzeallotzoo