Package: sigminer.prediction 0.2.0

sigminer.prediction: Train and Predict Cancer Subtype with Keras Model based on Mutational Signatures

Mutational signatures represent mutational processes occured in cancer evolution, thus are stable and genetic resources for subtyping. This tool provides functions for training neutral network models to predict the subtype a sample belongs to based on 'keras' and 'sigminer' packages.

Authors:Shixiang Wang [aut, cre]

sigminer.prediction_0.2.0.tar.gz
sigminer.prediction_0.2.0.zip(r-4.7)sigminer.prediction_0.2.0.zip(r-4.6)sigminer.prediction_0.2.0.zip(r-4.5)
sigminer.prediction_0.2.0.tgz(r-4.6-any)sigminer.prediction_0.2.0.tgz(r-4.5-any)
sigminer.prediction_0.2.0.tar.gz(r-4.7-any)sigminer.prediction_0.2.0.tar.gz(r-4.6-any)
sigminer.prediction_0.2.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
sigminer.prediction/json (API)

# Install 'sigminer.prediction' in R:
install.packages('sigminer.prediction', repos = c('https://shixiangwang.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/shixiangwang/sigminer.prediction/issues

On CRAN:

Conda:

kerasmutational-signaturesprostate-cancersigminer

2.60 score 8 stars 2 scripts 1 mentions 7 exports 146 dependencies

Last updated from:0572bfc65f. Checks:7 ERROR, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64ERROR165
source / vignettesOK239
linux-release-x86_64ERROR182
macos-release-arm64ERROR96
macos-oldrel-arm64ERROR89
windows-develERROR166
windows-releaseERROR150
windows-oldrelERROR162
wasm-releaseOK170

Exports:batch_modeling_and_fittingcopy_modellist_trained_modelsload_trained_modelmodeling_and_fittingprepare_datatidy

Dependencies:abindbackportsbase64encBiobaseBiocGenericsBiocManagerbootbroomcarcarDatacaretclasscliclockclustercodetoolscolorspaceconfigcorrplotcowplotcpp11data.tableDerivdiagramdigestDNAcopydoBydoParalleldplyre1071farverforeachforecastFormulafracdifffurrrfuturefuture.applygenericsggplot2ggpubrggrepelggsciggsignifglobalsgluegowergridBasegridExtragtablehardhathereipredisobanditeratorsjsonlitekerasKernSmoothlabelinglatticelavalifecyclelistenvlme4lmtestlubridatemaftoolsmagrittrMASSMatrixMatrixModelsmgcvmicrobenchmarkminqaModelMetricsmodelrnlmenloptrNMFnnetnumDerivparallellypbkrtestpheatmappillarpkgconfigplyrpngpolynompROCprocessxprodlimprogressrproxypspurrrquantregR6rappdirsrbibutilsRColorBrewerRcppRcppArmadilloRcppEigenRcppTOMLRdpackrecipesreformulasregistryreshape2reticulateRhtslibrlangrngtoolsrpartrprojrootrstatixrstudioapiS7scalesshapesigminerSparseMsparsevctrsSQUAREMstringistringrsurvivaltensorflowtfautographtfrunstibbletidyrtidyselecttimechangetimeDatetzdburcautf8vctrsviridisLitewhiskerwithryamlzeallotzoo