Package: sigminer.prediction 0.2.0

sigminer.prediction: Train and Predict Cancer Subtype with Keras Model based on Mutational Signatures

Mutational signatures represent mutational processes occured in cancer evolution, thus are stable and genetic resources for subtyping. This tool provides functions for training neutral network models to predict the subtype a sample belongs to based on 'keras' and 'sigminer' packages.

Authors:Shixiang Wang [aut, cre]

sigminer.prediction_0.2.0.tar.gz
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sigminer.prediction.pdf |sigminer.prediction.html✨
sigminer.prediction/json (API)

# Install 'sigminer.prediction' in R:
install.packages('sigminer.prediction', repos = c('https://shixiangwang.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/shixiangwang/sigminer.prediction/issues

On CRAN:

kerasmutational-signaturesprostate-cancersigminer

2.60 score 8 stars 2 scripts 1 mentions 7 exports 138 dependencies

Last updated 2 years agofrom:0572bfc65f. Checks:OK: 1 ERROR: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 14 2024
R-4.5-winERRORNov 14 2024
R-4.5-linuxERRORNov 14 2024
R-4.4-winERRORNov 14 2024
R-4.4-macERRORNov 14 2024
R-4.3-winERRORNov 14 2024
R-4.3-macERRORNov 14 2024

Exports:batch_modeling_and_fittingcopy_modellist_trained_modelsload_trained_modelmodeling_and_fittingprepare_datatidy

Dependencies:abindbackportsbase64encBiobaseBiocGenericsBiocManagerbootbroomcarcarDatacaretclasscliclockclustercodetoolscolorspaceconfigcorrplotcowplotcpp11data.tableDerivdiagramdigestDNAcopydoBydoParalleldplyre1071fansifarverforeachFormulafurrrfuturefuture.applygenericsggplot2ggpubrggrepelggsciggsignifglobalsgluegowergridBasegridExtragtablehardhathereipredisobanditeratorsjsonlitekerasKernSmoothlabelinglatticelavalifecyclelistenvlme4lubridatemaftoolsmagrittrMASSMatrixMatrixModelsmgcvmicrobenchmarkminqaModelMetricsmodelrmunsellnlmenloptrNMFnnetnumDerivparallellypbkrtestpheatmappillarpkgconfigplyrpngpolynompROCprocessxprodlimprogressrproxypspurrrquantregR6rappdirsRColorBrewerRcppRcppEigenRcppTOMLrecipesregistryreshape2reticulateRhtslibrlangrngtoolsrpartrprojrootrstatixrstudioapiscalesshapesigminerSparseMSQUAREMstringistringrsurvivaltensorflowtfautographtfrunstibbletidyrtidyselecttimechangetimeDatetzdbutf8vctrsviridisLitewhiskerwithryamlzeallotzlibbioc