Package: sigminer.prediction 0.2.0

sigminer.prediction: Train and Predict Cancer Subtype with Keras Model based on Mutational Signatures

Mutational signatures represent mutational processes occured in cancer evolution, thus are stable and genetic resources for subtyping. This tool provides functions for training neutral network models to predict the subtype a sample belongs to based on 'keras' and 'sigminer' packages.

Authors:Shixiang Wang [aut, cre]

sigminer.prediction_0.2.0.tar.gz
sigminer.prediction_0.2.0.zip(r-4.5)sigminer.prediction_0.2.0.zip(r-4.4)sigminer.prediction_0.2.0.zip(r-4.3)
sigminer.prediction_0.2.0.tgz(r-4.4-any)sigminer.prediction_0.2.0.tgz(r-4.3-any)
sigminer.prediction_0.2.0.tar.gz(r-4.5-noble)sigminer.prediction_0.2.0.tar.gz(r-4.4-noble)
sigminer.prediction_0.2.0.tgz(r-4.4-emscripten)sigminer.prediction_0.2.0.tgz(r-4.3-emscripten)
sigminer.prediction.pdf |sigminer.prediction.html
sigminer.prediction/json (API)

# Install sigminer.prediction in R:
install.packages('sigminer.prediction', repos = c('https://shixiangwang.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/shixiangwang/sigminer.prediction/issues

On CRAN:

kerasmutational-signaturesprostate-cancersigminer

7 exports 7 stars 0.82 score 133 dependencies

Last updated 2 years agofrom:0572bfc65fd9eb43bf0bc73b108881953b07787f

Exports:batch_modeling_and_fittingcopy_modellist_trained_modelsload_trained_modelmodeling_and_fittingprepare_datatidy

Dependencies:abindbackportsbase64encBiobaseBiocGenericsBiocManagerbootbroomcarcarDatacaretclasscliclockclustercodetoolscolorspaceconfigcorrplotcowplotcpp11data.tablediagramdigestDNAcopydoParalleldplyre1071ellipsisfansifarverforeachfurrrfuturefuture.applygenericsggplot2ggpubrggrepelggsciggsignifglobalsgluegowergridBasegridExtragtablehardhathereipredisobanditeratorsjsonlitekerasKernSmoothlabelinglatticelavalifecyclelistenvlme4lubridatemaftoolsmagrittrMASSMatrixMatrixModelsmgcvminqaModelMetricsmunsellnlmenloptrNMFnnetnumDerivparallellypbkrtestpillarpkgconfigplyrpngpolynompROCprocessxprodlimprogressrproxypspurrrquantregR6rappdirsRColorBrewerRcppRcppEigenRcppTOMLrecipesregistryreshape2reticulateRhtslibrlangrngtoolsrpartrprojrootrstatixrstudioapiscalesshapesigminerSparseMSQUAREMstringistringrsurvivaltensorflowtfautographtfrunstibbletidyrtidyselecttimechangetimeDatetzdbutf8vctrsviridisLitewhiskerwithryamlzeallotzlibbioc