Package: sigminer.prediction 0.2.0

sigminer.prediction: Train and Predict Cancer Subtype with Keras Model based on Mutational Signatures

Mutational signatures represent mutational processes occured in cancer evolution, thus are stable and genetic resources for subtyping. This tool provides functions for training neutral network models to predict the subtype a sample belongs to based on 'keras' and 'sigminer' packages.

Authors:Shixiang Wang [aut, cre]

sigminer.prediction_0.2.0.tar.gz
sigminer.prediction_0.2.0.zip(r-4.7)sigminer.prediction_0.2.0.zip(r-4.6)sigminer.prediction_0.2.0.zip(r-4.5)
sigminer.prediction_0.2.0.tgz(r-4.6-any)sigminer.prediction_0.2.0.tgz(r-4.5-any)
sigminer.prediction_0.2.0.tar.gz(r-4.7-any)sigminer.prediction_0.2.0.tar.gz(r-4.6-any)
sigminer.prediction_0.2.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
sigminer.prediction/json (API)

# Install 'sigminer.prediction' in R:
install.packages('sigminer.prediction', repos = c('https://shixiangwang.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/shixiangwang/sigminer.prediction/issues

On CRAN:

Conda:

kerasmutational-signaturesprostate-cancersigminer

2.60 score 8 stars 2 scripts 1 mentions 7 exports 145 dependencies

Last updated from:0572bfc65f. Checks:7 ERROR, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64ERROR172
source / vignettesOK251
linux-release-x86_64ERROR186
macos-release-arm64ERROR126
macos-oldrel-arm64ERROR130
windows-develERROR148
windows-releaseERROR130
windows-oldrelERROR154
wasm-releaseOK183

Exports:batch_modeling_and_fittingcopy_modellist_trained_modelsload_trained_modelmodeling_and_fittingprepare_datatidy

Dependencies:abindbackportsbase64encBiobaseBiocGenericsBiocManagerbootbroomcarcarDatacaretclasscliclockclustercodetoolscolorspaceconfigcorrplotcowplotcpp11data.tableDerivdiagramdigestDNAcopydoBydoParalleldplyre1071farverforeachforecastFormulafracdifffurrrfuturefuture.applygenericsggplot2ggpubrggrepelggsciggsignifglobalsgluegowergridBasegridExtragtablehardhathereipredisobanditeratorsjsonlitekerasKernSmoothlabelinglatticelavalifecyclelistenvlme4lmtestlubridatemaftoolsmagrittrMASSMatrixMatrixModelsmgcvminqaModelMetricsmodelrnlmenloptrNMFnnetnumDerivparallellypbkrtestpheatmappillarpkgconfigplyrpngpolynompROCprocessxprodlimprogressrproxypspurrrquantregR6rappdirsrbibutilsRColorBrewerRcppRcppArmadilloRcppEigenRcppTOMLRdpackrecipesreformulasregistryreshape2reticulateRhtslibrlangrngtoolsrpartrprojrootrstatixrstudioapiS7scalesshapesigminerSparseMsparsevctrsSQUAREMstringistringrsurvivaltensorflowtfautographtfrunstibbletidyrtidyselecttimechangetimeDatetzdburcautf8vctrsviridisLitewhiskerwithryamlzeallotzoo