Multidimensional Decoding Tumor Microenvironment for Immuno-Oncology Research3 months ago
Overview | Module Introduction | Methodology | Visualization | Tutorial | Citation | Feedback and helps
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Group Regression Analysis and Visualization10 months ago
UCSCXenaTools: an R package for Accessing Genomics Data from UCSC Xena platform, from Cancer Multi-omics to Single-cell RNA-seq11 months ago
Installation | Data Hub List | Usage | XenaData data.frame | Workflow | Browse datasets | More usages | QA | How to resume file from breakpoint | Citation | Acknowledgments
UCSCXenaTools: an R package for Accessing Genomics Data from UCSC Xena platform, from Cancer Multi-omics to Single-cell RNA-seq11 months ago
Installation | Data Hub List | Usage | XenaData data.frame | Workflow | Browse datasets | More usages | QA | How to resume file from breakpoint | Citation | Acknowledgments
Quickly Analyze Cancer Data with Data from UCSCXenaShiny11 months ago
Obtain Data | Execute bregr Pipeline | Generate Visualizations | Explore Further
Save Models to Local Disk11 months ago
Model Configurations11 months ago
Interaction Terms | Customized GLM Family
Supported Models11 months ago
Default Supported Models | Linear Models | Logistic Models | Cox-PH Models | Extended Supported Models
Examples of Accessible Functions2 years ago
Tutorial Book | Fetch Data | Fetch Gene Expression | Fetch Transcript Expression | Fetch Gene CNV | Fetch Gene Mutation | Fetch miRNA mature strand expression | Data Visualization | Visualize Single Gene Expression in PANCAN Dataset | Compare Gene Expression Level in Single Cancer Type | Compare Gene Expression Level in Different Anatomic Regions | Visualize Relationship between Gene Expression and Prognosis in the PANCAN Dataset | Other Functions and Data
Examples of Accessible Functions2 years ago
Tutorial Book | Fetch Data | Fetch Gene Expression | Fetch Transcript Expression | Fetch Gene CNV | Fetch Gene Mutation | Fetch miRNA mature strand expression | Data Visualization | Visualize Single Gene Expression in PANCAN Dataset | Compare Gene Expression Level in Single Cancer Type | Compare Gene Expression Level in Different Anatomic Regions | Visualize Relationship between Gene Expression and Prognosis in the PANCAN Dataset | Other Functions and Data
A Quick Start of sigminer Package2 years ago
QA | More
CellScape vignette2 years ago
Installation | Examples | Required parameters | Parameters that are optional for CellScape, but required for a TimeScape | Optional parameters | Clone colours | Mutation order | Titles | Interactivity | Obtaining the data | Targeted mutation data: | Copy number data: | Clonal composition data: | Documentation | References
phylotaR Tutorial3 years ago
Introduction | Installing NCBI BLAST+ Tools | Pipeline | Setup | Running | Restarting | Changing parameters | Cluster selection | Testing output
Analyze Copy Number Signatures with sigminer3 years ago
Generate allele-specific copy number profile | Classify the segments with Steele et al method | Find de novo signatures | Refit (19) reference signatures | Plot signatures | Signature assignment
tinyscholar4 years ago
Installation | Usage | Get You Google Scholar ID | Get Personal Profile | Show Table | Show Plot | Similar R package
Polar plot for survival and correlation connection5 years ago
Univariable Cox analysis | Correlation analysis | Visualization
ezcox: Easy Group Cox Analysis and Visualization5 years ago
ezcox: Easily Process a Batch of Cox Models5 years ago
Installation | Example | Run parallelly | Filter | Get models | Show models | Citation
ezcox: Easily Show Cox Forestplot in One Command5 years ago
forester | show_forest
metawho7 years ago
Installation | Example | Prepare data | Do deft analysis | Show analysis result | Combine with metafor | References
A Tiny Contribution Table Generator Based on ggplot27 years ago
A Tiny Contribution Table Generator Based on ggplot27 years ago
