{ "_id": "6a5daf6c9baadeef8ab53315", "Package": "sigminer.prediction", "Title": "Train and Predict Cancer Subtype with Keras Model based on\nMutational Signatures", "Version": "0.2.0", "Authors@R": "person(given = \"Shixiang\",\nfamily = \"Wang\",\nrole = c(\"aut\", \"cre\"),\nemail = \"w_shixiang@163.com\",\ncomment = c(ORCID = \"0000-0001-9855-7357\"))", "Description": "Mutational signatures represent mutational processes\noccured in cancer evolution, thus are stable and genetic\nresources for subtyping. This tool provides functions for\ntraining neutral network models to predict the subtype a sample\nbelongs to based on 'keras' and 'sigminer' packages.", "License": "Apache License (>= 2.0)", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.2.0", "Config/pak/sysreqs": "cmake make libbz2-dev libicu-dev liblzma-dev\nlibpng-dev python3 xz-utils zlib1g-dev", "Repository": "https://shixiangwang.r-universe.dev", "Date/Publication": "2022-06-25 09:09:40 UTC", "RemoteUrl": "https://github.com/ShixiangWang/sigminer.prediction", "RemoteRef": "HEAD", "RemoteSha": "0572bfc65fd9eb43bf0bc73b108881953b07787f", "NeedsCompilation": "no", "Packaged": { "Date": "2026-07-20 05:12:36 UTC", "User": "root" }, "Author": "Shixiang Wang [aut, cre] (ORCID:\n)", "Maintainer": "Shixiang Wang ", "_user": "shixiangwang", "_type": "src", "_file": "sigminer.prediction_0.2.0.tar.gz", "_fileid": "https://r2.ropensci.org/f44079f4df6f4a5424af8945d670d392ab28aafa4d011451637856e2d776458f", "_filesize": 618952, "_sha256": "f44079f4df6f4a5424af8945d670d392ab28aafa4d011451637856e2d776458f", "_expires": "2026-10-28T05:17:29.000Z", "_created": "2026-07-20T05:12:36.000Z", "_published": "2026-07-20T05:17:31.794Z", "_jobs": [ { "job": 88276633955, "time": 219, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "ERROR", "artifact": "8451517106" }, { "job": 88276633879, "time": 221, "config": "linux-release-x86_64", "r": "4.6.1", "check": "ERROR", "artifact": "8451517550" }, { "job": 88276633895, "time": 104, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "ERROR", "artifact": "8451488824" }, { "job": 88276633917, "time": 158, "config": "macos-release-arm64", "r": "4.6.1", "check": "ERROR", "artifact": "8451502173" }, { "job": 88276184744, "time": 230, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "8451464702" }, { "job": 88276633949, "time": 143, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "8451498350" }, { "job": 88276633896, "time": 156, "config": "windows-devel", "r": "4.7.0", "check": "ERROR", "artifact": "8451501652" }, { "job": 88276633916, "time": 152, "config": "windows-oldrel", "r": "4.5.3", "check": "ERROR", "artifact": "8451500481" }, { "job": 88276633923, "time": 250, "config": "windows-release", "r": "4.6.1", "check": "ERROR", "artifact": "8451525162" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/shixiangwang/actions/runs/29718441395", "_status": "success", "_upstream": "https://github.com/ShixiangWang/sigminer.prediction", "_commit": { "id": "0572bfc65fd9eb43bf0bc73b108881953b07787f", "author": "ShixiangWang ", "committer": "ShixiangWang ", "message": "update\n", "time": 1656148180 }, "_maintainer": { "name": "Shixiang Wang", "email": "w_shixiang@163.com", "login": "shixiangwang", "orcid": "0000-0001-9855-7357", "twitter": "@WangShxiang", "description": "形每万变，神唯守一。", "uuid": 25057508 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "keras", "role": "Depends" }, { "package": "R", "version": ">= 3.6", "role": "Depends" }, { "package": "caret", "role": "Imports" }, { "package": "sigminer", "version": ">= 1.0", "role": "Imports" }, { "package": "dplyr", "role": "Imports" } ], "_owner": "shixiangwang", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_topics": [ "keras", "mutational-signatures", "prostate-cancer", "sigminer" ], "_stars": 8, "_contributors": [ { "user": "shixiangwang", "count": 8, "uuid": 25057508 } ], "_userbio": { "uuid": 25057508, "type": "user", "name": "Shixiang Wang (王诗翔)", "followers": 898, "description": "形每万变，神唯守一。" }, "_downloads": { "count": 0, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/sigminer.prediction" }, "_mentions": 1, "_devurl": "https://github.com/shixiangwang/sigminer.prediction", "_searchresults": 2, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/readme.html", "extra/readme.md", "extra/sigminer.prediction.html", "manual.pdf" ], "_cranurl": false, "_exports": [ "batch_modeling_and_fitting", "copy_model", "list_trained_models", "load_trained_model", "modeling_and_fitting", "prepare_data", "tidy" ], "_help": [ { "page": "batch_modeling_and_fitting", "title": "Construct A Batch of Keras Models", "topics": [ "batch_modeling_and_fitting" ] }, { "page": "copy_model", "title": "Copy Model File", "topics": [ "copy_model" ] }, { "page": "list_trained_models", "title": "List Current Available Trained Keras Models", "topics": [ "list_trained_models" ] }, { "page": "load_trained_model", "title": "Load Trained Models", "topics": [ "load_trained_model" ] }, { "page": "modeling_and_fitting", "title": "Create 5-layer Keras Model and Fitting Datasets", "topics": [ "modeling_and_fitting" ] }, { "page": "prepare_data", "title": "Prepare Training and Test Dataset", "topics": [ "prepare_data" ] }, { "page": "tidy", "title": "Tidy Modeling Result", "topics": [ "tidy" ] } ], "_readme": "https://github.com/ShixiangWang/sigminer.prediction/raw/HEAD/README.md", "_rundeps": [ "abind", "backports", "base64enc", "Biobase", "BiocGenerics", "BiocManager", "boot", "broom", "car", "carData", "caret", "class", "cli", "clock", "cluster", "codetools", "colorspace", "config", "corrplot", "cowplot", "cpp11", "data.table", "Deriv", "diagram", "digest", "DNAcopy", "doBy", "doParallel", "dplyr", "e1071", "farver", "foreach", "forecast", "Formula", "fracdiff", "furrr", "future", "future.apply", "generics", "ggplot2", "ggpubr", "ggrepel", "ggsci", "ggsignif", "globals", "glue", "gower", "gridBase", "gridExtra", "gtable", "hardhat", "here", "ipred", "isoband", "iterators", "jsonlite", "keras", "KernSmooth", "labeling", "lattice", "lava", "lifecycle", "listenv", "lme4", "lmtest", "lubridate", "maftools", "magrittr", "MASS", "Matrix", "MatrixModels", "mgcv", "minqa", "ModelMetrics", "modelr", "nlme", "nloptr", "NMF", "nnet", "numDeriv", "parallelly", "pbkrtest", "pheatmap", "pillar", "pkgconfig", "plyr", "png", "polynom", "pROC", "processx", "prodlim", "progressr", "proxy", "ps", "purrr", "quantreg", "R6", "rappdirs", "rbibutils", "RColorBrewer", "Rcpp", "RcppArmadillo", "RcppEigen", "RcppTOML", "Rdpack", "recipes", "reformulas", "registry", "reshape2", "reticulate", "Rhtslib", "rlang", "rngtools", "rpart", "rprojroot", "rstatix", "rstudioapi", "S7", "scales", "shape", "sigminer", "SparseM", "sparsevctrs", "SQUAREM", "stringi", "stringr", "survival", "tensorflow", "tfautograph", "tfruns", "tibble", "tidyr", "tidyselect", "timechange", "timeDate", "tzdb", "urca", "utf8", "vctrs", "viridisLite", "whisker", "withr", "yaml", "zeallot", "zoo" ], "_score": 2.6020599913279625, "_indexed": true, "_nocasepkg": "sigminer.prediction", "_universes": [ "shixiangwang" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.2.0", "date": "2026-07-20T05:15:58.000Z", "distro": "resolute", "commit": "0572bfc65fd9eb43bf0bc73b108881953b07787f", "fileid": "https://r2.ropensci.org/931d73966507fbc76634d49cd71ad46f64484f1b135b0309267d10bad6f69dd7", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/shixiangwang/actions/runs/29718441395" }, { "r": "4.6.1", "os": "linux", "version": "0.2.0", "date": "2026-07-20T05:16:03.000Z", "distro": "resolute", "commit": "0572bfc65fd9eb43bf0bc73b108881953b07787f", "fileid": "https://r2.ropensci.org/3e3aaa138dd3d2a4ca21f358d49b77fc989a3384aebb9cb88827654738c682ea", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/shixiangwang/actions/runs/29718441395" }, { "r": "4.5.3", "os": "mac", "version": "0.2.0", "date": "2026-07-20T05:14:13.000Z", "commit": "0572bfc65fd9eb43bf0bc73b108881953b07787f", "fileid": "https://r2.ropensci.org/cdf2c0ac534fa1a249e4be0f95d27d8e7a0b343252c04bfb5269cd090728481f", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/shixiangwang/actions/runs/29718441395" }, { "r": "4.6.1", "os": "mac", "version": "0.2.0", "date": "2026-07-20T05:14:49.000Z", "commit": "0572bfc65fd9eb43bf0bc73b108881953b07787f", "fileid": "https://r2.ropensci.org/afa027484a8cbaebf53051cdb5eaa365d84a6b2ea9556edf5b71de1fbc6c7a4a", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/shixiangwang/actions/runs/29718441395" }, { "r": "4.6.0", "os": "wasm", "version": "0.2.0", "date": "2026-07-20T05:15:16.000Z", "commit": "0572bfc65fd9eb43bf0bc73b108881953b07787f", "fileid": "https://r2.ropensci.org/1f033b16dcbf68a63b2c4ba9b879266fa8d9c6e208f3baadaeca23505fcfd357", "status": "success", "buildurl": "https://github.com/r-universe/shixiangwang/actions/runs/29718441395" }, { "r": "4.7.0", "os": "win", "version": "0.2.0", "date": "2026-07-20T05:14:04.000Z", "commit": "0572bfc65fd9eb43bf0bc73b108881953b07787f", "fileid": "https://r2.ropensci.org/d3ed524124a1c37838fa146971793d8199323f81693b34fb45255d21e19c899c", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/shixiangwang/actions/runs/29718441395" }, { "r": "4.5.3", "os": "win", "version": "0.2.0", "date": "2026-07-20T05:14:02.000Z", "commit": "0572bfc65fd9eb43bf0bc73b108881953b07787f", "fileid": "https://r2.ropensci.org/2af4ddd180df62c5e030dd35e3395fc98730c90dd671387f0b1e26bb1aff18b4", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/shixiangwang/actions/runs/29718441395" }, { "r": "4.6.1", "os": "win", "version": "0.2.0", "date": "2026-07-20T05:15:29.000Z", "commit": "0572bfc65fd9eb43bf0bc73b108881953b07787f", "fileid": "https://r2.ropensci.org/0ec5e5fc2756e411f53a288af1858e40a6abec343d893ff8a10ac4270867e7f6", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/shixiangwang/actions/runs/29718441395" } ] }