{
  "_id": "6a12be0bacfb0bcc41d1cfb5",
  "Package": "sigminer.prediction",
  "Title": "Train and Predict Cancer Subtype with Keras Model based on\nMutational Signatures",
  "Version": "0.2.0",
  "Authors@R": "person(given = \"Shixiang\",\nfamily = \"Wang\",\nrole = c(\"aut\", \"cre\"),\nemail = \"w_shixiang@163.com\",\ncomment = c(ORCID = \"0000-0001-9855-7357\"))",
  "Description": "Mutational signatures represent mutational processes\noccured in cancer evolution, thus are stable and genetic\nresources for subtyping. This tool provides functions for\ntraining neutral network models to predict the subtype a sample\nbelongs to based on 'keras' and 'sigminer' packages.",
  "License": "Apache License (>= 2.0)",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.2.0",
  "Config/pak/sysreqs": "cmake make libbz2-dev libicu-dev liblzma-dev\nlibpng-dev python3 xz-utils zlib1g-dev",
  "Repository": "https://shixiangwang.r-universe.dev",
  "Date/Publication": "2022-06-25 09:09:40 UTC",
  "RemoteUrl": "https://github.com/ShixiangWang/sigminer.prediction",
  "RemoteRef": "HEAD",
  "RemoteSha": "0572bfc65fd9eb43bf0bc73b108881953b07787f",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-24 08:56:24 UTC",
    "User": "root"
  },
  "Author": "Shixiang Wang [aut, cre] (ORCID:\n<https://orcid.org/0000-0001-9855-7357>)",
  "Maintainer": "Shixiang Wang <w_shixiang@163.com>",
  "MD5sum": "fbf50e30581b2c0e53c70ca6d00c9489",
  "_user": "shixiangwang",
  "_type": "src",
  "_file": "sigminer.prediction_0.2.0.tar.gz",
  "_fileid": "08b1017f812128e5373221ef2c0cb482d4d534841ef3436f2bd0bfcfba3b237c",
  "_filesize": 616610,
  "_sha256": "08b1017f812128e5373221ef2c0cb482d4d534841ef3436f2bd0bfcfba3b237c",
  "_created": "2026-05-24T08:56:24.000Z",
  "_published": "2026-05-24T08:59:55.567Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77585234949,
      "time": 165,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "ERROR",
      "artifact": "7183842211"
    },
    {
      "job": 77585234942,
      "time": 182,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7183843850"
    },
    {
      "job": 77585234929,
      "time": 89,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "ERROR",
      "artifact": "7183833879"
    },
    {
      "job": 77585234927,
      "time": 96,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7183834792"
    },
    {
      "job": 77585008402,
      "time": 239,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7183823897"
    },
    {
      "job": 77585234931,
      "time": 170,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7183842606"
    },
    {
      "job": 77585234946,
      "time": 166,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "ERROR",
      "artifact": "7183842344"
    },
    {
      "job": 77585234937,
      "time": 162,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "ERROR",
      "artifact": "7183841965"
    },
    {
      "job": 77585234930,
      "time": 150,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7183840745"
    }
  ],
  "_buildurl": "https://github.com/r-universe/shixiangwang/actions/runs/26356836188",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/ShixiangWang/sigminer.prediction",
  "_commit": {
    "id": "0572bfc65fd9eb43bf0bc73b108881953b07787f",
    "author": "ShixiangWang <wangshx@shanghaitech.edu.cn>",
    "committer": "ShixiangWang <wangshx@shanghaitech.edu.cn>",
    "message": "update\n",
    "time": 1656148180
  },
  "_maintainer": {
    "name": "Shixiang Wang",
    "email": "w_shixiang@163.com",
    "login": "shixiangwang",
    "orcid": "0000-0001-9855-7357",
    "twitter": "@WangShxiang",
    "description": "形每万变，神唯守一。",
    "uuid": 25057508
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "keras",
      "role": "Depends"
    },
    {
      "package": "R",
      "version": ">= 3.6",
      "role": "Depends"
    },
    {
      "package": "caret",
      "role": "Imports"
    },
    {
      "package": "sigminer",
      "version": ">= 1.0",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    }
  ],
  "_owner": "shixiangwang",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_topics": [
    "keras",
    "mutational-signatures",
    "prostate-cancer",
    "sigminer"
  ],
  "_stars": 8,
  "_contributors": [
    {
      "user": "shixiangwang",
      "count": 8,
      "uuid": 25057508
    }
  ],
  "_userbio": {
    "uuid": 25057508,
    "type": "user",
    "name": "Shixiang Wang (王诗翔)",
    "description": "形每万变，神唯守一。"
  },
  "_downloads": {
    "count": 0,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/sigminer.prediction"
  },
  "_mentions": 1,
  "_devurl": "https://github.com/shixiangwang/sigminer.prediction",
  "_searchresults": 2,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/readme.html",
    "extra/readme.md",
    "extra/sigminer.prediction.html",
    "manual.pdf"
  ],
  "_cranurl": false,
  "_exports": [
    "batch_modeling_and_fitting",
    "copy_model",
    "list_trained_models",
    "load_trained_model",
    "modeling_and_fitting",
    "prepare_data",
    "tidy"
  ],
  "_help": [
    {
      "page": "batch_modeling_and_fitting",
      "title": "Construct A Batch of Keras Models",
      "topics": [
        "batch_modeling_and_fitting"
      ]
    },
    {
      "page": "copy_model",
      "title": "Copy Model File",
      "topics": [
        "copy_model"
      ]
    },
    {
      "page": "list_trained_models",
      "title": "List Current Available Trained Keras Models",
      "topics": [
        "list_trained_models"
      ]
    },
    {
      "page": "load_trained_model",
      "title": "Load Trained Models",
      "topics": [
        "load_trained_model"
      ]
    },
    {
      "page": "modeling_and_fitting",
      "title": "Create 5-layer Keras Model and Fitting Datasets",
      "topics": [
        "modeling_and_fitting"
      ]
    },
    {
      "page": "prepare_data",
      "title": "Prepare Training and Test Dataset",
      "topics": [
        "prepare_data"
      ]
    },
    {
      "page": "tidy",
      "title": "Tidy Modeling Result",
      "topics": [
        "tidy"
      ]
    }
  ],
  "_readme": "https://github.com/ShixiangWang/sigminer.prediction/raw/HEAD/README.md",
  "_rundeps": [
    "abind",
    "backports",
    "base64enc",
    "Biobase",
    "BiocGenerics",
    "BiocManager",
    "boot",
    "broom",
    "car",
    "carData",
    "caret",
    "class",
    "cli",
    "clock",
    "cluster",
    "codetools",
    "colorspace",
    "config",
    "corrplot",
    "cowplot",
    "cpp11",
    "data.table",
    "Deriv",
    "diagram",
    "digest",
    "DNAcopy",
    "doBy",
    "doParallel",
    "dplyr",
    "e1071",
    "farver",
    "foreach",
    "forecast",
    "Formula",
    "fracdiff",
    "furrr",
    "future",
    "future.apply",
    "generics",
    "ggplot2",
    "ggpubr",
    "ggrepel",
    "ggsci",
    "ggsignif",
    "globals",
    "glue",
    "gower",
    "gridBase",
    "gridExtra",
    "gtable",
    "hardhat",
    "here",
    "ipred",
    "isoband",
    "iterators",
    "jsonlite",
    "keras",
    "KernSmooth",
    "labeling",
    "lattice",
    "lava",
    "lifecycle",
    "listenv",
    "lme4",
    "lmtest",
    "lubridate",
    "maftools",
    "magrittr",
    "MASS",
    "Matrix",
    "MatrixModels",
    "mgcv",
    "microbenchmark",
    "minqa",
    "ModelMetrics",
    "modelr",
    "nlme",
    "nloptr",
    "NMF",
    "nnet",
    "numDeriv",
    "parallelly",
    "pbkrtest",
    "pheatmap",
    "pillar",
    "pkgconfig",
    "plyr",
    "png",
    "polynom",
    "pROC",
    "processx",
    "prodlim",
    "progressr",
    "proxy",
    "ps",
    "purrr",
    "quantreg",
    "R6",
    "rappdirs",
    "rbibutils",
    "RColorBrewer",
    "Rcpp",
    "RcppArmadillo",
    "RcppEigen",
    "RcppTOML",
    "Rdpack",
    "recipes",
    "reformulas",
    "registry",
    "reshape2",
    "reticulate",
    "Rhtslib",
    "rlang",
    "rngtools",
    "rpart",
    "rprojroot",
    "rstatix",
    "rstudioapi",
    "S7",
    "scales",
    "shape",
    "sigminer",
    "SparseM",
    "sparsevctrs",
    "SQUAREM",
    "stringi",
    "stringr",
    "survival",
    "tensorflow",
    "tfautograph",
    "tfruns",
    "tibble",
    "tidyr",
    "tidyselect",
    "timechange",
    "timeDate",
    "tzdb",
    "urca",
    "utf8",
    "vctrs",
    "viridisLite",
    "whisker",
    "withr",
    "yaml",
    "zeallot",
    "zoo"
  ],
  "_score": 2.6020599913279625,
  "_indexed": true,
  "_nocasepkg": "sigminer.prediction",
  "_universes": [
    "shixiangwang"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.2.0",
      "date": "2026-05-24T08:58:53.000Z",
      "distro": "noble",
      "commit": "0572bfc65fd9eb43bf0bc73b108881953b07787f",
      "fileid": "4b72aa02525afe52c4ba505f345566f4e85f3fe86a0d87ce1d116683705adf02",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/shixiangwang/actions/runs/26356836188"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.2.0",
      "date": "2026-05-24T08:59:10.000Z",
      "distro": "noble",
      "commit": "0572bfc65fd9eb43bf0bc73b108881953b07787f",
      "fileid": "6604ed5dc8471289148402af2fec325c7fb98b4cbae61afc2d6316e0dc792671",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/shixiangwang/actions/runs/26356836188"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.2.0",
      "date": "2026-05-24T08:57:48.000Z",
      "commit": "0572bfc65fd9eb43bf0bc73b108881953b07787f",
      "fileid": "44a9fe86f217dd8ab53b1e959e309a7bd17a70d4dc3758dbc7e3cc9ea3ef4d31",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/shixiangwang/actions/runs/26356836188"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.2.0",
      "date": "2026-05-24T08:57:51.000Z",
      "commit": "0572bfc65fd9eb43bf0bc73b108881953b07787f",
      "fileid": "4440071764e9937ae3af9d8a47b65561b26e0deba15b6f20c8262a9329ab7e7b",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/shixiangwang/actions/runs/26356836188"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.2.0",
      "date": "2026-05-24T08:59:29.000Z",
      "commit": "0572bfc65fd9eb43bf0bc73b108881953b07787f",
      "fileid": "7a704ac5efb7f68d2718838739c6b400dc12d9df798786b0e8c975bd85a785d1",
      "status": "success",
      "buildurl": "https://github.com/r-universe/shixiangwang/actions/runs/26356836188"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.2.0",
      "date": "2026-05-24T08:57:47.000Z",
      "commit": "0572bfc65fd9eb43bf0bc73b108881953b07787f",
      "fileid": "b19c159d12c624e496fbeb20ee46da32e9562f465560668cf76abbe323df14e3",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/shixiangwang/actions/runs/26356836188"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.2.0",
      "date": "2026-05-24T08:57:45.000Z",
      "commit": "0572bfc65fd9eb43bf0bc73b108881953b07787f",
      "fileid": "99bda68116c25e8baf5c13637b9d8137eed48bec9371ade64c862fcd3210f78b",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/shixiangwang/actions/runs/26356836188"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.2.0",
      "date": "2026-05-24T08:57:55.000Z",
      "commit": "0572bfc65fd9eb43bf0bc73b108881953b07787f",
      "fileid": "a5c50f09dc17f1fd52c8f19b287a76aad5d663162866164bd91b078bb9d59907",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/shixiangwang/actions/runs/26356836188"
    }
  ]
}