{ "_id": "6ad750f00d12c08e591b8e65", "Package": "sigminer.prediction", "Title": "Train and Predict Cancer Subtype with Keras Model based on\nMutational Signatures", "Version": "0.2.0", "Authors@R": "person(given = \"Shixiang\",\nfamily = \"Wang\",\nrole = c(\"aut\", \"cre\"),\nemail = \"w_shixiang@163.com\",\ncomment = c(ORCID = \"0000-0001-9855-7357\"))", "Description": "Mutational signatures represent mutational processes\noccured in cancer evolution, thus are stable and genetic\nresources for subtyping. This tool provides functions for\ntraining neutral network models to predict the subtype a sample\nbelongs to based on 'keras' and 'sigminer' packages.", "License": "Apache License (>= 2.0)", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.2.0", "Config/pak/sysreqs": "cmake make libbz2-dev libicu-dev liblzma-dev\nlibpng-dev python3 xz-utils zlib1g-dev", "Repository": "https://shixiangwang.r-universe.dev", "Date/Publication": "2022-06-25 09:09:40 UTC", "RemoteUrl": "https://github.com/ShixiangWang/sigminer.prediction", "RemoteRef": "HEAD", "RemoteSha": "0572bfc65fd9eb43bf0bc73b108881953b07787f", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-20 11:15:48 UTC", "User": "root" }, "Author": "Shixiang Wang [aut, cre] (ORCID:\n)", "Maintainer": "Shixiang Wang ", "_user": "shixiangwang", "_type": "src", "_file": "sigminer.prediction_0.2.0.tar.gz", "_fileid": "https://r2.ropensci.org/002c048624e8beceaf1685fd32bc314d129ac777b04b1a31ab8dba62dae9b665", "_filesize": 620183, "_sha256": "002c048624e8beceaf1685fd32bc314d129ac777b04b1a31ab8dba62dae9b665", "_expires": "2027-01-28T11:30:54.000Z", "_created": "2026-10-20T11:15:48.000Z", "_published": "2026-10-20T11:30:56.239Z", "_upstream": "https://github.com/ShixiangWang/sigminer.prediction", "_status": "success", "_maintainer": { "name": "Shixiang Wang", "email": "w_shixiang@163.com", "login": "shixiangwang", "orcid": "0000-0001-9855-7357", "twitter": "@WangShxiang", "description": "形每万变，神唯守一。", "uuid": 25057508 }, "_jobs": [ { "job": 118597570433, "time": 165, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "ERROR", "artifact": "12260238886" }, { "job": 118597570513, "time": 152, "config": "linux-release-x86_64", "r": "4.6.1", "check": "ERROR", "artifact": "12260725729" }, { "job": 118597570469, "time": 98, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "ERROR", "artifact": "12260687275" }, { "job": 118597570438, "time": 399, "config": "macos-release-arm64", "r": "4.6.1", "check": "FAIL", "artifact": "" }, { "job": 118594186419, "time": 517, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "12260785252" }, { "job": 118597570415, "time": 119, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "12261010239" }, { "job": 118597570578, "time": 149, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "ERROR", "artifact": "12259734382" }, { "job": 118597570423, "time": 219, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "ERROR", "artifact": "12260383942" }, { "job": 118597570441, "time": 144, "config": "windows-release-x86_64", "r": "4.6.1", "check": "ERROR", "artifact": "12260093894" } ], "_buildurl": "https://github.com/r-universe/shixiangwang/actions/runs/39412681447", "_commit": { "id": "0572bfc65fd9eb43bf0bc73b108881953b07787f", "author": "ShixiangWang ", "committer": "ShixiangWang ", "message": "update\n", "time": 1656148180 }, "_distro": "resolute", "_host": "GitHub-Actions", "_registered": true, "_dependencies": [ { "package": "keras", "role": "Depends" }, { "package": "R", "version": ">= 3.6", "role": "Depends" }, { "package": "caret", "role": "Imports" }, { "package": "sigminer", "version": ">= 1.0", "role": "Imports" }, { "package": "dplyr", "role": "Imports" } ], "_owner": "shixiangwang", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_topics": [ "keras", "mutational-signatures", "prostate-cancer", "sigminer" ], "_stars": 8, "_contributors": [ { "user": "shixiangwang", "count": 8, "uuid": 25057508 } ], "_userbio": { "uuid": 25057508, "type": "user", "name": "Shixiang Wang (王诗翔)", "followers": 901, "description": "形每万变，神唯守一。" }, "_downloads": { "count": 0, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/sigminer.prediction" }, "_mentions": 1, "_devurl": "https://github.com/shixiangwang/sigminer.prediction", "_searchresults": 2, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/readme.html", "extra/readme.md", "extra/sigminer.prediction.html" ], "_cranurl": false, "_exports": [ "batch_modeling_and_fitting", "copy_model", "list_trained_models", "load_trained_model", "modeling_and_fitting", "prepare_data", "tidy" ], "_help": [ { "page": "batch_modeling_and_fitting", "title": "Construct A Batch of Keras Models", "topics": [ "batch_modeling_and_fitting" ] }, { "page": "copy_model", "title": "Copy Model File", "topics": [ "copy_model" ] }, { "page": "list_trained_models", "title": "List Current Available Trained Keras Models", "topics": [ "list_trained_models" ] }, { "page": "load_trained_model", "title": "Load Trained Models", "topics": [ "load_trained_model" ] }, { "page": "modeling_and_fitting", "title": "Create 5-layer Keras Model and Fitting Datasets", "topics": [ "modeling_and_fitting" ] }, { "page": "prepare_data", "title": "Prepare Training and Test Dataset", "topics": [ "prepare_data" ] }, { "page": "tidy", "title": "Tidy Modeling Result", "topics": [ "tidy" ] } ], "_readme": "https://github.com/ShixiangWang/sigminer.prediction/raw/HEAD/README.md", "_rundeps": [ "abind", "backports", "base64enc", "Biobase", "BiocGenerics", "BiocManager", "boot", "broom", "car", "carData", "caret", "class", "cli", "clock", "cluster", "codetools", "colorspace", "config", "corrplot", "cowplot", "cpp11", "data.table", "Deriv", "diagram", "digest", "DNAcopy", "doBy", "doParallel", "dplyr", "e1071", "farver", "foreach", "forecast", "Formula", "fracdiff", "furrr", "future", "future.apply", "generics", "ggplot2", "ggpubr", "ggrepel", "ggsci", "ggsignif", "globals", "glue", "gower", "gridBase", "gridExtra", "gtable", "hardhat", "here", "ipred", "isoband", "iterators", "jsonlite", "keras", "KernSmooth", "labeling", "lattice", "lava", "lifecycle", "listenv", "lme4", "lmtest", "lubridate", "maftools", "magrittr", "MASS", "Matrix", "MatrixModels", "mgcv", "minqa", "ModelMetrics", "modelr", "nlme", "nloptr", "NMF", "nnet", "numDeriv", "parallelly", "pbkrtest", "pheatmap", "pillar", "pkgconfig", "plyr", "png", "polynom", "pROC", "processx", "prodlim", "progressr", "proxy", "ps", "purrr", "quantreg", "R6", "rappdirs", "rbibutils", "RColorBrewer", "Rcpp", "RcppArmadillo", "RcppEigen", "RcppTOML", "Rdpack", "recipes", "reformulas", "registry", "reshape2", "reticulate", "Rhtslib", "rlang", "rngtools", "rpart", "rprojroot", "rstatix", "rstudioapi", "S7", "scales", "shape", "sigminer", "SparseM", "sparsevctrs", "SQUAREM", "stringi", "stringr", "survival", "tensorflow", "tfautograph", "tfruns", "tibble", "tidyr", "tidyselect", "timechange", "timeDate", "tzdb", "urca", "utf8", "vctrs", "viridisLite", "whisker", "withr", "yaml", "zeallot", "zoo" ], "_score": 2.6020599913279625, "_indexed": true, "_nocasepkg": "sigminer.prediction", "_universes": [ "shixiangwang" ], "_binaries": [ { "r": "4.6.1", "os": "mac", "version": "0.2.0", "date": "2026-09-26T18:23:15.000Z", "commit": "0572bfc65fd9eb43bf0bc73b108881953b07787f", "fileid": "https://r2.ropensci.org/42b0ba2a222a48da7acb58d41de9ccf9a58c301e0bbb7b32362a637d929b34bb", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/shixiangwang/actions/runs/36261971801" }, { "r": "4.7.0", "os": "linux", "version": "0.2.0", "date": "2026-10-20T11:18:21.000Z", "distro": "resolute", "commit": "0572bfc65fd9eb43bf0bc73b108881953b07787f", "fileid": "https://r2.ropensci.org/73ac95c305d1d01b62ce50dea7de961d5e55a2938b25a9217f1952c2c06966b7", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/shixiangwang/actions/runs/39412681447" }, { "r": "4.6.1", "os": "linux", "version": "0.2.0", "date": "2026-10-20T11:18:06.000Z", "distro": "resolute", "commit": "0572bfc65fd9eb43bf0bc73b108881953b07787f", "fileid": "https://r2.ropensci.org/b5ef5e8d0c9f71f8157ded7077ea641c0d19ab856633cedece71f9942426d615", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/shixiangwang/actions/runs/39412681447" }, { "r": "4.5.3", "os": "mac", "version": "0.2.0", "date": "2026-10-20T11:27:05.000Z", "commit": "0572bfc65fd9eb43bf0bc73b108881953b07787f", "fileid": "https://r2.ropensci.org/e12cf9889d40a08e0e00730a74c9c5a34ce9cba61baa38d343f8aa5734d12240", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/shixiangwang/actions/runs/39412681447" }, { "r": "4.6.0", "os": "wasm", "version": "0.2.0", "date": "2026-10-20T11:18:04.000Z", "commit": "0572bfc65fd9eb43bf0bc73b108881953b07787f", "fileid": "https://r2.ropensci.org/8b7813d2f447a0bdc5e1acc754808b008b30db0014a2238a267a5e6798ce6d64", "status": "success", "buildurl": "https://github.com/r-universe/shixiangwang/actions/runs/39412681447" }, { "r": "4.7.0", "os": "win", "version": "0.2.0", "date": "2026-10-20T11:17:02.000Z", "commit": "0572bfc65fd9eb43bf0bc73b108881953b07787f", "fileid": "https://r2.ropensci.org/0ef896d8ee469530ab7c93dcbff7d03fcecdc417ad847d20edd9ae640941c4d0", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/shixiangwang/actions/runs/39412681447" }, { "r": "4.5.3", "os": "win", "version": "0.2.0", "date": "2026-10-20T11:17:16.000Z", "commit": "0572bfc65fd9eb43bf0bc73b108881953b07787f", "fileid": "https://r2.ropensci.org/536c53e2b4e3cc74af10fd5271c675b2c710c2ec5a10f033955c804126e70b7e", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/shixiangwang/actions/runs/39412681447" }, { "r": "4.6.1", "os": "win", "version": "0.2.0", "date": "2026-10-20T11:17:04.000Z", "commit": "0572bfc65fd9eb43bf0bc73b108881953b07787f", "fileid": "https://r2.ropensci.org/749259bebfaf7956acd9f42b6699dad05f1e861caf6dad3925d4a5d39aafdace", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/shixiangwang/actions/runs/39412681447" } ] }