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  1. contribution::CRediT
    CRediT
  2. contribution::demo
    A demo for plotting contribution table
  3. contribution::palette
    palette
  4. contribution::CRediT
    CRediT
  5. contribution::demo
    A demo for plotting contribution table
  6. contribution::palette
    palette
  7. copynumber::BAF
    Artificial SNP array data
  8. copynumber::logR
    Artificial SNP array data
  9. copynumber::lymphoma
    3K aCGH data
  10. copynumber::micma
    Subset of 244K aCGH data
  11. IDConverter::icgc
    ICGC Sample Identifiers
  12. IDConverter::pcawg_full
    PCAWG Full Sample Identifiers
  13. IDConverter::pcawg_simple
    PCAWG Mutation Related Simplified Sample Identifiers
  14. IDConverter::tcga
    TCGA Case Identifiers
  15. IDConverter::icgc
    ICGC Sample Identifiers
  16. IDConverter::pcawg_full
    PCAWG Full Sample Identifiers
  17. IDConverter::pcawg_simple
    PCAWG Mutation Related Simplified Sample Identifiers
  18. IDConverter::tcga
    TCGA Case Identifiers
  19. IOBR::imvigor210_pdata
    IMvigor210 Bladder Cancer Immunotherapy Cohort Data
  20. IOBR::null_models
    NULL Model Coefficients for MCPcounter
  21. IOBR::pdata_stad
    Toy STAD Phenotype Data
  22. IOBR::sig_group
    Grouped gene signatures for IOBR analysis
  23. IOBR::signature_collection
    Gene signature collection for pathway and immune analysis
  24. IOBR::stad_group
    Example Clinical Data for TCGA-STAD Gastric Cancer Analysis
  25. IOBR::subgroup_data
    Example Dataset for Subgroup Survival Analysis
  26. IOBR::tcga_stad_pdata
    TCGA-STAD Clinical and Molecular Annotation Data
  27. metawho::wang2019
    Hazard ratio (HR) for disease progression analysis comparing TMB-high with TMB-low in three NSCLC datasets
  28. phylotaR::aotus
    aotus
    Phylota
  29. phylotaR::birds
    birds
    TreeMan
  30. phylotaR::bromeliads
    bromeliads
    Phylota
  31. phylotaR::cycads
    cycads
    Phylota
  32. phylotaR::dragonflies
    dragonflies
    Phylota
  33. phylotaR::mammals
    mammals
    TreeMan
  34. phylotaR::plants
    plants
    TreeMan
  35. phylotaR::sturgeons
    sturgeons
    Phylota
  36. phylotaR::tardigrades
    tardigrades
    Phylota
  37. phylotaR::tinamous
    tinamous
    Phylota
  38. phylotaR::yeasts
    yeasts
    Phylota
  39. sigminer::centromeres.hg19
    Location of Centromeres at Genome Build hg19
  40. sigminer::centromeres.hg38
    Location of Centromeres at Genome Build hg38
  41. sigminer::centromeres.mm10
    Location of Centromeres at Genome Build mm10
  42. sigminer::centromeres.mm9
    Location of Centromeres at Genome Build mm9
  43. sigminer::centromeres.T2T
    Location of Centromeres at Genome Build T2T
  44. sigminer::chromsize.hg19
    Chromosome Size of Genome Build hg19
  45. sigminer::chromsize.hg38
    Chromosome Size of Genome Build hg38
  46. sigminer::chromsize.mm10
    Chromosome Size of Genome Build mm10
  47. sigminer::chromsize.mm9
    Chromosome Size of Genome Build mm9
  48. sigminer::chromsize.T2T
    Chromosome Size of Genome Build T2T
  49. sigminer::CN.features
    Classification Table of Copy Number Features Devised by Wang et al. for Method 'W'
  50. sigminer::cytobands.hg19
    Location of Chromosome Cytobands at Genome Build hg19
  51. sigminer::cytobands.hg38
    Location of Chromosome Cytobands at Genome Build hg38
  52. sigminer::cytobands.mm10
    Location of Chromosome Cytobands at Genome Build mm10
  53. sigminer::cytobands.mm9
    Location of Chromosome Cytobands at Genome Build mm9
  54. sigminer::cytobands.T2T
    Location of Chromosome Cytobands at Genome Build T2T
  55. sigminer::simulated_catalogs
    A List of Simulated SBS-96 Catalog Matrix
  56. sigminer::transcript.hg19
    Merged Transcript Location at Genome Build hg19
  57. sigminer::transcript.hg38
    Merged Transcript Location at Genome Build hg38
  58. sigminer::transcript.mm10
    Merged Transcript Location at Genome Build mm10
  59. sigminer::transcript.mm9
    Merged Transcript Location at Genome Build mm9
  60. sigminer::transcript.T2T
    Merged Transcript Location at Genome Build T2T
  61. UCSCXenaShiny::ccle_absolute
    ABSOLUTE Result of CCLE Database
  62. UCSCXenaShiny::ccle_info
    Phenotype Info of CCLE Database
  63. UCSCXenaShiny::ccle_info_fine
    Cleaned Phenotype Info of CCLE Database for grouping
  64. UCSCXenaShiny::pcawg_info
    Phenotype Info of PCAWG Database
  65. UCSCXenaShiny::pcawg_info_fine
    Cleaned Phenotype Info of PCAWG Database for grouping
  66. UCSCXenaShiny::pcawg_purity
    Purity Data of PCAWG
  67. UCSCXenaShiny::tcga_clinical
    Toil Hub: TCGA Clinical Data
  68. UCSCXenaShiny::tcga_clinical_fine
    Toil Hub: Cleaned TCGA Clinical Data for grouping
  69. UCSCXenaShiny::tcga_genome_instability
    TCGA: Genome Instability Data
  70. UCSCXenaShiny::tcga_gtex
    Toil Hub: Merged TCGA GTEx Selected Phenotype
  71. UCSCXenaShiny::tcga_purity
    TCGA: Purity Data
  72. UCSCXenaShiny::tcga_subtypes
    TCGA Subtype Data
  73. UCSCXenaShiny::tcga_surv
    Toil Hub: TCGA Survival Data
  74. UCSCXenaShiny::TCGA.organ
    TCGA: Organ Data
  75. UCSCXenaShiny::toil_info
    Toil Hub: TCGA TARGET GTEX Selected Phenotype
  76. UCSCXenaShiny::ccle_absolute
    ABSOLUTE Result of CCLE Database
  77. UCSCXenaShiny::ccle_info
    Phenotype Info of CCLE Database
  78. UCSCXenaShiny::ccle_info_fine
    Cleaned Phenotype Info of CCLE Database for grouping
  79. UCSCXenaShiny::pcawg_info
    Phenotype Info of PCAWG Database
  80. UCSCXenaShiny::pcawg_info_fine
    Cleaned Phenotype Info of PCAWG Database for grouping
  81. UCSCXenaShiny::pcawg_purity
    Purity Data of PCAWG
  82. UCSCXenaShiny::tcga_clinical
    Toil Hub: TCGA Clinical Data
  83. UCSCXenaShiny::tcga_clinical_fine
    Toil Hub: Cleaned TCGA Clinical Data for grouping
  84. UCSCXenaShiny::tcga_genome_instability
    TCGA: Genome Instability Data
  85. UCSCXenaShiny::tcga_gtex
    Toil Hub: Merged TCGA GTEx Selected Phenotype
  86. UCSCXenaShiny::tcga_purity
    TCGA: Purity Data
  87. UCSCXenaShiny::tcga_subtypes
    TCGA Subtype Data
  88. UCSCXenaShiny::tcga_surv
    Toil Hub: TCGA Survival Data
  89. UCSCXenaShiny::TCGA.organ
    TCGA: Organ Data
  90. UCSCXenaShiny::toil_info
    Toil Hub: TCGA TARGET GTEX Selected Phenotype
  91. UCSCXenaTools::XenaData
    Xena Hub Information
  92. UCSCXenaTools::XenaData
    Xena Hub Information