Package: UCSCXenaTools 1.5.0

UCSCXenaTools: Download and Explore Datasets from UCSC Xena Data Hubs

Download and explore datasets from UCSC Xena data hubs, which are a collection of UCSC-hosted public databases such as TCGA, ICGC, TARGET, GTEx, CCLE, and others. Databases are normalized so they can be combined, linked, filtered, explored and downloaded.

Authors:Shixiang Wang [aut, cre], Xue-Song Liu [aut], Martin Morgan [ctb], Christine Stawitz [rev], Carl Ganz [rev]

UCSCXenaTools_1.5.0.tar.gz
UCSCXenaTools_1.5.0.zip(r-4.5)UCSCXenaTools_1.5.0.zip(r-4.4)UCSCXenaTools_1.5.0.zip(r-4.3)
UCSCXenaTools_1.5.0.tgz(r-4.4-any)UCSCXenaTools_1.5.0.tgz(r-4.3-any)
UCSCXenaTools_1.5.0.tar.gz(r-4.5-noble)UCSCXenaTools_1.5.0.tar.gz(r-4.4-noble)
UCSCXenaTools_1.5.0.tgz(r-4.4-emscripten)UCSCXenaTools_1.5.0.tgz(r-4.3-emscripten)
UCSCXenaTools.pdf |UCSCXenaTools.html
UCSCXenaTools/json (API)
NEWS

# Install UCSCXenaTools in R:
install.packages('UCSCXenaTools', repos = c('https://shixiangwang.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/ropensci/ucscxenatools/issues

Datasets:

On CRAN:

api-clientbioinformaticsccledownloadericgctcgatoiltreehouseucscucsc-xena

28 exports 100 stars 4.19 score 35 dependencies 1 dependents 670 downloads

Last updated 5 months agofrom:4daf88b3e95523de7eec0da4e651c50b6bb8c30f

Exports:.XenaHub%>%availTCGAcohortsdatasetsdownloadTCGAfetchfetch_dataset_identifiersfetch_dataset_samplesfetch_dense_valuesfetch_sparse_valuesgetTCGAdatahas_probeMaphostssamplesshowTCGAto_snakexena_default_hostsXenaBrowseXenaDataUpdateXenaDownloadXenaFilterXenaGenerateXenaHubXenaPrepareXenaQueryXenaQueryProbeMapXenaScan

Dependencies:askpassbitbit64clicliprcpp11crayoncurldigestdplyrfansigenericsgluehmshttrjsonlitelifecyclemagrittrmimeopensslpillarpkgconfigprettyunitsprogressR6readrrlangsystibbletidyselecttzdbutf8vctrsvroomwithr

UCSCXenaTools: an R package for Accessing Genomics Data from UCSC Xena platform, from Cancer Multi-omics to Single-cell RNA-seq

Rendered fromUSCSXenaTools.Rmdusingknitr::rmarkdownon Jun 21 2024.

Last update: 2024-01-13
Started: 2018-08-19