Package: UCSCXenaTools 1.5.0
![](https://github.com/ropensci/UCSCXenaTools/raw/HEAD/man/figures/logo.png)
UCSCXenaTools: Download and Explore Datasets from UCSC Xena Data Hubs
Download and explore datasets from UCSC Xena data hubs, which are a collection of UCSC-hosted public databases such as TCGA, ICGC, TARGET, GTEx, CCLE, and others. Databases are normalized so they can be combined, linked, filtered, explored and downloaded.
Authors:
UCSCXenaTools_1.5.0.tar.gz
UCSCXenaTools_1.5.0.zip(r-4.5)UCSCXenaTools_1.5.0.zip(r-4.4)UCSCXenaTools_1.5.0.zip(r-4.3)
UCSCXenaTools_1.5.0.tgz(r-4.4-any)UCSCXenaTools_1.5.0.tgz(r-4.3-any)
UCSCXenaTools_1.5.0.tar.gz(r-4.5-noble)UCSCXenaTools_1.5.0.tar.gz(r-4.4-noble)
UCSCXenaTools_1.5.0.tgz(r-4.4-emscripten)UCSCXenaTools_1.5.0.tgz(r-4.3-emscripten)
UCSCXenaTools.pdf |UCSCXenaTools.html✨
UCSCXenaTools/json (API)
NEWS
# Install 'UCSCXenaTools' in R: |
install.packages('UCSCXenaTools', repos = c('https://shixiangwang.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ropensci/ucscxenatools/issues
- XenaData - Xena Hub Information
api-clientbioinformaticsccledownloadericgctcgatoiltreehouseucscucsc-xena
Last updated 10 days agofrom:12ccd29f19. Checks:OK: 1 NOTE: 6. Indexed: no.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Aug 29 2024 |
R-4.5-win | NOTE | Aug 29 2024 |
R-4.5-linux | NOTE | Aug 29 2024 |
R-4.4-win | NOTE | Aug 29 2024 |
R-4.4-mac | NOTE | Aug 29 2024 |
R-4.3-win | NOTE | Aug 29 2024 |
R-4.3-mac | NOTE | Aug 29 2024 |
Exports:.XenaHub%>%availTCGAcohortsdatasetsdownloadTCGAfetchfetch_dataset_identifiersfetch_dataset_samplesfetch_dense_valuesfetch_sparse_valuesgetTCGAdatahas_probeMaphostssamplesshowTCGAto_snakexena_default_hostsXenaBrowseXenaDataUpdateXenaDownloadXenaFilterXenaGenerateXenaHubXenaPrepareXenaQueryXenaQueryProbeMapXenaScan
Dependencies:askpassbitbit64clicliprcpp11crayoncurldigestdplyrfansigenericsgluehmshttrjsonlitelifecyclemagrittrmimeopensslpillarpkgconfigprettyunitsprogressR6readrrlangsystibbletidyselecttzdbutf8vctrsvroomwithr