Package: UCSCXenaTools 1.5.0

UCSCXenaTools: Download and Explore Datasets from UCSC Xena Data Hubs

Download and explore datasets from UCSC Xena data hubs, which are a collection of UCSC-hosted public databases such as TCGA, ICGC, TARGET, GTEx, CCLE, and others. Databases are normalized so they can be combined, linked, filtered, explored and downloaded.

Authors:Shixiang Wang [aut, cre], Xue-Song Liu [aut], Martin Morgan [ctb], Christine Stawitz [rev], Carl Ganz [rev]

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UCSCXenaTools.pdf |UCSCXenaTools.html✨
UCSCXenaTools/json (API)
NEWS

Peer review:

Bug tracker:https://github.com/ropensci/ucscxenatools/issues

On CRAN:

api-clientbioinformaticsccledownloadericgctcgatoiltreehouseucscucsc-xena

28 exports 102 stars 4.41 score 35 dependencies 1 dependents 4 mentions 136 scripts 779 downloads

Last updated 10 days agofrom:12ccd29f19. Checks:OK: 1 NOTE: 6. Indexed: no.

Exports:.XenaHub%>%availTCGAcohortsdatasetsdownloadTCGAfetchfetch_dataset_identifiersfetch_dataset_samplesfetch_dense_valuesfetch_sparse_valuesgetTCGAdatahas_probeMaphostssamplesshowTCGAto_snakexena_default_hostsXenaBrowseXenaDataUpdateXenaDownloadXenaFilterXenaGenerateXenaHubXenaPrepareXenaQueryXenaQueryProbeMapXenaScan

Dependencies:askpassbitbit64clicliprcpp11crayoncurldigestdplyrfansigenericsgluehmshttrjsonlitelifecyclemagrittrmimeopensslpillarpkgconfigprettyunitsprogressR6readrrlangsystibbletidyselecttzdbutf8vctrsvroomwithr