NEWS
UCSCXenaTools 1.5.0
- Bugs fixed.
- Removed useless action or check config files.
- Removed the
XenaShiny()
function to reduce the dependencies.
- Updated XenaData. Only minor datasets change found from previous data release.
- Hiplot mirror is down, so we removed its usage in documentation (not delete internal code).
- Added two new queries from xenaPython.
UCSCXenaTools 1.4.8 (2022-06-20)
- Updated to latest Xena dataset list.
UCSCXenaTools 1.4.7 (2021-09-15)
- 3 datasets were added into
XenaData
.
[1] "TCGA_survival_data_2.txt"
[2] "clinical_CellLinePolyA_21.06_2021-06-15.tsv"
[3] "CellLinePolyA_21.06_hugo_log2tpm_58581genes_2021-06-15.tsv"
- Added support for gene symbol checking and data cache in
fetch()
.
UCSCXenaTools 1.4.6 (2021-07-17)
- Added code to check hiplot server status.
- Fixed check warnings to follow CRAN policy (#36).
UCSCXenaTools 1.4.5 (2021-05-27)
- Fixed the download bug for pan-cancer data hub due to unvalid URL.
url_encode()
is added internally to transform reserved characters (/
is kept).
- Fixed the download bug because UCSCXenaShiny mutate the result of
XenaQuery()
and thus change the column number. This bug will not affect XenaTools itself.
UCSCXenaTools 1.4.4 (2021-04-06)
- Fixed the download bug because UCSCXenaShiny mutate the result of
XenaQuery()
and thus change the column order. This bug will not affect XenaTools itself.
UCSCXenaTools 1.4.3 (2021-03-22)
- Implemented using hiplot for
fetch()
functions.
UCSCXenaTools 1.4.1
- Removed unpublished Xena hub TDI.
UCSCXenaTools 1.4.0 (2021-01-19)
- Supported downloading data from Hiplot mirror site (
https://xena.hiplot.com.cn/
).
UCSCXenaTools 1.3.6 (2020-11-23)
- Fixed a bug about try times for data download.
- Make sure a message instead of an error will be returned if download process failed.
UCSCXenaTools 1.3.5 (2020-11-14)
- Added TDI data Hub containing 9 new datasets.
UCSCXenaTools 1.3.4 (2020-09-30)
- Updated UCSC Xena datasets, now 1670 datasets available.
UCSCXenaTools 1.3.3 (2020-08-05)
- Added
fetch_sparse_values()
function.
- Updated treehouse URL.
- Added treehouse datasets.
UCSCXenaTools 1.3.2 (2020-07-14)
- Fixed bug about an error happened when querying mutation data.
- Dropped "Treehouse" data hub.
- Updated code to update Xena hub datasets.
UCSCXenaTools 1.3.1 (2020-03-18)
- Added
max_try
option in query and download functions, so they can handle internet connection issue better
UCSCXenaTools 1.3.0 (2020-02-26)
- Added a new data hub: PCAWG Xena Hub (#24).
- Added a new data hub: Kids First Xena Hub (#24).
- Updated data update function more robustly.