Package: IDConverter 0.4.0

IDConverter: Convert Identifiers in Biological Databases

Identifiers in biological databases connect different levels of metadata, phenotype data or genotype data. This tool is designed to easily convert identifiers within or between different biological databases (Wang, Shixiang, et al. (2021) <doi:10.1371/journal.pgen.1009557>).

Authors:Shixiang Wang [aut, cre]

IDConverter_0.4.0.tar.gz
IDConverter_0.4.0.zip(r-4.7-any)IDConverter_0.4.0.zip(r-4.6-any)IDConverter_0.4.0.zip(r-4.5-any)
IDConverter_0.4.0.tgz(r-4.6-any)IDConverter_0.4.0.tgz(r-4.5-any)
IDConverter_0.4.0.tar.gz(r-4.7-any)IDConverter_0.4.0.tar.gz(r-4.6-any)
IDConverter_0.4.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
IDConverter/json (API)

# Install 'IDConverter' in R:

install.packages('IDConverter', repos = c('https://shixiangwang.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/wanglabcsu/idconverter/issues

Pkgdown/docs site:https://wanglabcsu.github.io

Datasets:

icgc - ICGC Sample Identifiers
pcawg_full - PCAWG Full Sample Identifiers
pcawg_simple - PCAWG Mutation Related Simplified Sample Identifiers
tcga - TCGA Case Identifiers

On CRAN:

4.15 score 10 stars 28 scripts 13 downloads 13 exports 19 dependencies

Last updated from:536f157bb4. Checks:9 OK. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	OK	165
source / vignettes	OK	254
linux-release-x86_64	OK	161
macos-release-arm64	OK	143
macos-oldrel-arm64	OK	130
windows-devel-x86_64	OK	117
windows-release-x86_64	OK	104
windows-oldrel-x86_64	OK	117
wasm-release	OK	143

Exports:build_annotables convert_custom convert_hm_genes convert_hm_orthologs convert_icgc convert_pcawg convert_tcga filter_tcga_barcodes load_data ls_annotables pair_gdc_samples parse_gdc_file_uuid resolve_gene_aliases

Dependencies:askpass cli curl data.table glue httr jsonlite lifecycle magrittr mime openssl pillar pkgconfig R6 rlang sys tibble utf8 vctrs

Getting Started with IDConverter

Overview | ID Conversion | Gene ID Conversion | Gene Annotation Tables | Working with Custom Databases

Rendered fromIDConverter.Rmdusingknitr::rmarkdown

Last update: 2026-07-25
Started: 2026-07-25

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Build Gene Annotation Tables from Ensembl BioMart	build_annotables
Convert Identifiers with Custom Database	convert_custom
Convert Gene IDs between Ensembl and Hugo Symbol System	convert_hm_genes
Convert Gene IDs Between Human and Mouse via Orthology	convert_hm_orthologs
Convert ICGC Identifiers	convert_icgc
Convert PCAWG Identifiers	convert_pcawg
Convert TCGA Identifiers	convert_tcga
Filter TCGA Replicate Sample Barcodes	filter_tcga_barcodes
ICGC Sample Identifiers	icgc
Load Data from Local or Remote Zenodo Repository	load_data
List Available Annotation Tables	ls_annotables
Pair Tumor-Normal Samples from GDC Manifest	pair_gdc_samples
Parse Sample ID from GDC Portal File UUID	parse_gdc_file_uuid
PCAWG Full Sample Identifiers	pcawg_full
PCAWG Mutation Related Simplified Sample Identifiers	pcawg_simple
Resolve Gene Symbol Aliases	resolve_gene_aliases
TCGA Case Identifiers	tcga