Package: IDConverter 0.3.5
IDConverter: Convert Identifiers in Biological Databases
Identifiers in biological databases connect different levels of metadata, phenotype data or genotype data. This tool is designed to easily convert identifiers within or between different biological databases (Wang, Shixiang, et al. (2021) <doi:10.1371/journal.pgen.1009557>).
Authors:
IDConverter_0.3.5.tar.gz
IDConverter_0.3.5.zip(r-4.5)IDConverter_0.3.5.zip(r-4.4)IDConverter_0.3.5.zip(r-4.3)
IDConverter_0.3.5.tgz(r-4.4-any)IDConverter_0.3.5.tgz(r-4.3-any)
IDConverter_0.3.5.tar.gz(r-4.5-noble)IDConverter_0.3.5.tar.gz(r-4.4-noble)
IDConverter_0.3.5.tgz(r-4.4-emscripten)IDConverter_0.3.5.tgz(r-4.3-emscripten)
IDConverter.pdf |IDConverter.html✨
IDConverter/json (API)
NEWS
# Install 'IDConverter' in R: |
install.packages('IDConverter', repos = c('https://shixiangwang.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/shixiangwang/idconverter/issues
- icgc - ICGC Sample Identifiers
- pcawg_full - PCAWG Full Sample Identifiers
- pcawg_simple - PCAWG Mutation Related Simplified Sample Identifiers
- tcga - TCGA Case Identifiers
Last updated 1 years agofrom:af8b5455ba. Checks:OK: 7. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Aug 17 2024 |
R-4.5-win | OK | Aug 17 2024 |
R-4.5-linux | OK | Aug 17 2024 |
R-4.4-win | OK | Aug 17 2024 |
R-4.4-mac | OK | Aug 17 2024 |
R-4.3-win | OK | Aug 17 2024 |
R-4.3-mac | OK | Aug 17 2024 |
Exports:convert_customconvert_hm_genesconvert_icgcconvert_pcawgconvert_tcgafilter_tcga_barcodesload_datals_annotablesparse_gdc_file_uuid
Dependencies:askpassclicurldata.tablefansigluehttrjsonlitelifecyclemagrittrmimeopensslpillarpkgconfigR6rlangsystibbleutf8vctrs
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Convert Identifiers with Custom Database | convert_custom |
Convert Human/Mouse Gene IDs between Ensembl and Hugo Symbol System | convert_hm_genes |
Convert ICGC Identifiers | convert_icgc |
Convert PCAWG Identifiers | convert_pcawg |
Convert TCGA Identifiers | convert_tcga |
Filter TCGA Replicate Sample Barcodes | filter_tcga_barcodes |
ICGC Sample Identifiers | icgc |
Load Data from Local or Remote Zenodo Repository | load_data |
List Annotation Tables from 'annotables' package | ls_annotables |
Parse Sample ID from GDC Portal File UUID | parse_gdc_file_uuid |
PCAWG Full Sample Identifiers | pcawg_full |
PCAWG Mutation Related Simplified Sample Identifiers | pcawg_simple |
TCGA Case Identifiers | tcga |