Package: IDConverter 0.3.5

IDConverter: Convert Identifiers in Biological Databases

Identifiers in biological databases connect different levels of metadata, phenotype data or genotype data. This tool is designed to easily convert identifiers within or between different biological databases (Wang, Shixiang, et al. (2021) <doi:10.1371/journal.pgen.1009557>).

Authors:Shixiang Wang [aut, cre]

IDConverter_0.3.5.tar.gz
IDConverter_0.3.5.zip(r-4.5)IDConverter_0.3.5.zip(r-4.4)IDConverter_0.3.5.zip(r-4.3)
IDConverter_0.3.5.tgz(r-4.4-any)IDConverter_0.3.5.tgz(r-4.3-any)
IDConverter_0.3.5.tar.gz(r-4.5-noble)IDConverter_0.3.5.tar.gz(r-4.4-noble)
IDConverter_0.3.5.tgz(r-4.4-emscripten)IDConverter_0.3.5.tgz(r-4.3-emscripten)
IDConverter.pdf |IDConverter.html✨
IDConverter/json (API)
NEWS

# Install 'IDConverter' in R:
install.packages('IDConverter', repos = c('https://shixiangwang.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/shixiangwang/idconverter/issues

Datasets:
  • icgc - ICGC Sample Identifiers
  • pcawg_full - PCAWG Full Sample Identifiers
  • pcawg_simple - PCAWG Mutation Related Simplified Sample Identifiers
  • tcga - TCGA Case Identifiers

On CRAN:

9 exports 8 stars 1.00 score 20 dependencies 20 scripts 68 downloads

Last updated 1 years agofrom:af8b5455ba. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKAug 17 2024
R-4.5-winOKAug 17 2024
R-4.5-linuxOKAug 17 2024
R-4.4-winOKAug 17 2024
R-4.4-macOKAug 17 2024
R-4.3-winOKAug 17 2024
R-4.3-macOKAug 17 2024

Exports:convert_customconvert_hm_genesconvert_icgcconvert_pcawgconvert_tcgafilter_tcga_barcodesload_datals_annotablesparse_gdc_file_uuid

Dependencies:askpassclicurldata.tablefansigluehttrjsonlitelifecyclemagrittrmimeopensslpillarpkgconfigR6rlangsystibbleutf8vctrs