Package: IDConverter 0.3.5

IDConverter: Convert Identifiers in Biological Databases

Identifiers in biological databases connect different levels of metadata, phenotype data or genotype data. This tool is designed to easily convert identifiers within or between different biological databases (Wang, Shixiang, et al. (2021) <doi:10.1371/journal.pgen.1009557>).

Authors:Shixiang Wang [aut, cre]

IDConverter_0.3.5.tar.gz
IDConverter_0.3.5.zip(r-4.5)IDConverter_0.3.5.zip(r-4.4)IDConverter_0.3.5.zip(r-4.3)
IDConverter_0.3.5.tgz(r-4.4-any)IDConverter_0.3.5.tgz(r-4.3-any)
IDConverter_0.3.5.tar.gz(r-4.5-noble)IDConverter_0.3.5.tar.gz(r-4.4-noble)
IDConverter_0.3.5.tgz(r-4.4-emscripten)IDConverter_0.3.5.tgz(r-4.3-emscripten)
IDConverter.pdf |IDConverter.html✨
IDConverter/json (API)
NEWS

# Install 'IDConverter' in R:

install.packages('IDConverter', repos = c('https://shixiangwang.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/shixiangwang/idconverter/issues

Datasets:

icgc - ICGC Sample Identifiers
pcawg_full - PCAWG Full Sample Identifiers
pcawg_simple - PCAWG Mutation Related Simplified Sample Identifiers
tcga - TCGA Case Identifiers

On CRAN:

9 exports 8 stars 1.08 score 20 dependencies 49 downloads

Last updated 11 months agofrom:af8b5455ba

Exports:convert_custom convert_hm_genes convert_icgc convert_pcawg convert_tcga filter_tcga_barcodes load_data ls_annotables parse_gdc_file_uuid

Dependencies:askpass cli curl data.table fansi glue httr jsonlite lifecycle magrittr mime openssl pillar pkgconfig R6 rlang sys tibble utf8 vctrs

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Convert Identifiers with Custom Database	convert_custom
Convert Human/Mouse Gene IDs between Ensembl and Hugo Symbol System	convert_hm_genes
Convert ICGC Identifiers	convert_icgc
Convert PCAWG Identifiers	convert_pcawg
Convert TCGA Identifiers	convert_tcga
Filter TCGA Replicate Sample Barcodes	filter_tcga_barcodes
ICGC Sample Identifiers	icgc
Load Data from Local or Remote Zenodo Repository	load_data
List Annotation Tables from 'annotables' package	ls_annotables
Parse Sample ID from GDC Portal File UUID	parse_gdc_file_uuid
PCAWG Full Sample Identifiers	pcawg_full
PCAWG Mutation Related Simplified Sample Identifiers	pcawg_simple
TCGA Case Identifiers	tcga