Package: IDConverter 0.3.5

IDConverter: Convert Identifiers in Biological Databases

Identifiers in biological databases connect different levels of metadata, phenotype data or genotype data. This tool is designed to easily convert identifiers within or between different biological databases (Wang, Shixiang, et al. (2021) <doi:10.1371/journal.pgen.1009557>).

Authors:Shixiang Wang [aut, cre]

IDConverter_0.3.5.tar.gz
IDConverter_0.3.5.zip(r-4.5)IDConverter_0.3.5.zip(r-4.4)IDConverter_0.3.5.zip(r-4.3)
IDConverter_0.3.5.tgz(r-4.4-any)IDConverter_0.3.5.tgz(r-4.3-any)
IDConverter_0.3.5.tar.gz(r-4.5-noble)IDConverter_0.3.5.tar.gz(r-4.4-noble)
IDConverter_0.3.5.tgz(r-4.4-emscripten)IDConverter_0.3.5.tgz(r-4.3-emscripten)
IDConverter.pdf |IDConverter.html✨
IDConverter/json (API)
NEWS

# Install 'IDConverter' in R:
install.packages('IDConverter', repos = c('https://shixiangwang.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/shixiangwang/idconverter/issues

Datasets:
  • icgc - ICGC Sample Identifiers
  • pcawg_full - PCAWG Full Sample Identifiers
  • pcawg_simple - PCAWG Mutation Related Simplified Sample Identifiers
  • tcga - TCGA Case Identifiers

On CRAN:

2.94 score 8 stars 22 scripts 76 downloads 9 exports 20 dependencies

Last updated 1 years agofrom:af8b5455ba. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 15 2024
R-4.5-winOKNov 15 2024
R-4.5-linuxOKNov 15 2024
R-4.4-winOKNov 15 2024
R-4.4-macOKNov 15 2024
R-4.3-winOKNov 15 2024
R-4.3-macOKNov 15 2024

Exports:convert_customconvert_hm_genesconvert_icgcconvert_pcawgconvert_tcgafilter_tcga_barcodesload_datals_annotablesparse_gdc_file_uuid

Dependencies:askpassclicurldata.tablefansigluehttrjsonlitelifecyclemagrittrmimeopensslpillarpkgconfigR6rlangsystibbleutf8vctrs