{
  "_id": "6a64dc77d7a87e95b9706769",
  "Package": "IDConverter",
  "Title": "Convert Identifiers in Biological Databases",
  "Version": "0.4.0",
  "Date": "2026-07-25",
  "Authors@R": "person(\"Shixiang\", \"Wang\", , \"w_shixiang@163.com\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0001-9855-7357\"))",
  "Maintainer": "Shixiang Wang <w_shixiang@163.com>",
  "Description": "Identifiers in biological databases connect different\nlevels of metadata, phenotype data or genotype data. This tool\nis designed to easily convert identifiers within or between\ndifferent biological databases (Wang, Shixiang, et al. (2021)\n<DOI:10.1371/journal.pgen.1009557>).",
  "License": "MIT + file LICENSE",
  "URL": "https://github.com/WangLabCSU/IDConverter,\nhttps://wanglabcsu.github.io/IDConverter/",
  "BugReports": "https://github.com/WangLabCSU/IDConverter/issues",
  "VignetteBuilder": "knitr",
  "biocViews": "",
  "Encoding": "UTF-8",
  "LazyData": "true",
  "LazyDataCompression": "xz",
  "Roxygen": "list(markdown = TRUE, roclets = c(\"collate\", \"namespace\",\n\"rd\", \"roxytest::testthat_roclet\"))",
  "RoxygenNote": "7.3.3",
  "Config/pak/sysreqs": "libssl-dev",
  "Repository": "https://shixiangwang.r-universe.dev",
  "Date/Publication": "2026-07-25 10:29:00 UTC",
  "RemoteUrl": "https://github.com/ShixiangWang/IDConverter",
  "RemoteRef": "HEAD",
  "RemoteSha": "4a08cf3c7b293cf79848a291dc85ba42c0701916",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-07-25 15:51:26 UTC",
    "User": "root"
  },
  "Author": "Shixiang Wang [aut, cre] (ORCID:\n<https://orcid.org/0000-0001-9855-7357>)",
  "_user": "shixiangwang",
  "_type": "src",
  "_file": "IDConverter_0.4.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/4948190178522cdd1746aad9a812955518efef210070813c8a7563620eedd661",
  "_filesize": 6267047,
  "_sha256": "4948190178522cdd1746aad9a812955518efef210070813c8a7563620eedd661",
  "_expires": "2026-11-02T15:55:32.000Z",
  "_created": "2026-07-25T15:51:26.000Z",
  "_published": "2026-07-25T15:55:35.014Z",
  "_jobs": [
    {
      "job": 89695028365,
      "time": 176,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8621178766"
    },
    {
      "job": 89695028370,
      "time": 183,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8621179504"
    },
    {
      "job": 89695028367,
      "time": 136,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8621172517"
    },
    {
      "job": 89695028390,
      "time": 96,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8621166836"
    },
    {
      "job": 89694696898,
      "time": 229,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8621151723"
    },
    {
      "job": 89695028349,
      "time": 136,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8621172825"
    },
    {
      "job": 89695028424,
      "time": 113,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8621169492"
    },
    {
      "job": 89695028426,
      "time": 115,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8621169969"
    },
    {
      "job": 89695028396,
      "time": 108,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8621168933"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/shixiangwang/actions/runs/30164332489",
  "_status": "success",
  "_upstream": "https://github.com/ShixiangWang/IDConverter",
  "_commit": {
    "id": "4a08cf3c7b293cf79848a291dc85ba42c0701916",
    "author": "Shixiang Wang (王诗翔) <wangshx@csu.edu.cn>",
    "committer": "Shixiang Wang (王诗翔) <wangshx@csu.edu.cn>",
    "message": "fix: add rmarkdown to Suggests, simplify vignette to prevent CI failures\n\n- Add rmarkdown to Suggests (required for vignette output format)\n- Merge custom database example into the ID Conversion section\n- Remove redundant Working with Custom Databases section\n\nFixes macOS CI vignette rebuild failure.\n\nR CMD check: Status OK\n\nCo-Authored-By: Claude <noreply@anthropic.com>\n",
    "time": 1784975340
  },
  "_maintainer": {
    "name": "Shixiang Wang",
    "email": "w_shixiang@163.com",
    "login": "shixiangwang",
    "orcid": "0000-0001-9855-7357",
    "twitter": "@WangShxiang",
    "description": "形每万变，神唯守一。",
    "uuid": 25057508
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.5.0",
      "role": "Depends"
    },
    {
      "package": "data.table",
      "role": "Imports"
    },
    {
      "package": "httr",
      "role": "Imports"
    },
    {
      "package": "tibble",
      "role": "Imports"
    },
    {
      "package": "biomaRt",
      "role": "Suggests"
    },
    {
      "package": "covr",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "readr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    }
  ],
  "_owner": "shixiangwang",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-30",
      "n": 18
    }
  ],
  "_tags": [],
  "_stars": 10,
  "_contributors": [
    {
      "user": "shixiangwang",
      "count": 54,
      "uuid": 25057508
    }
  ],
  "_userbio": {
    "uuid": 25057508,
    "type": "user",
    "name": "Shixiang Wang (王诗翔)",
    "followers": 900,
    "description": "形每万变，神唯守一。"
  },
  "_downloads": {
    "count": 13,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/IDConverter"
  },
  "_devurl": "https://github.com/wanglabcsu/idconverter",
  "_pkgdown": "https://wanglabcsu.github.io/IDConverter/",
  "_searchresults": 28,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/IDConverter.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "LICENSE",
    "manual.pdf"
  ],
  "_cranurl": false,
  "_releases": [
    {
      "version": "0.2.0",
      "date": "2022-03-09"
    },
    {
      "version": "0.3.0",
      "date": "2022-03-11"
    },
    {
      "version": "0.3.2",
      "date": "2022-06-03"
    },
    {
      "version": "0.3.3",
      "date": "2022-08-15"
    },
    {
      "version": "0.3.4",
      "date": "2023-03-14"
    }
  ],
  "_exports": [
    "build_annotables",
    "convert_custom",
    "convert_hm_genes",
    "convert_hm_orthologs",
    "convert_icgc",
    "convert_pcawg",
    "convert_tcga",
    "filter_tcga_barcodes",
    "load_data",
    "ls_annotables",
    "pair_gdc_samples",
    "parse_gdc_file_uuid",
    "resolve_gene_aliases"
  ],
  "_datasets": [
    {
      "name": "icgc",
      "title": "ICGC Sample Identifiers",
      "object": "icgc",
      "class": [
        "data.table",
        "data.frame"
      ],
      "fields": [
        "icgc_sample_id",
        "submitted_sample_id",
        "icgc_specimen_id",
        "submitted_specimen_id",
        "icgc_donor_id",
        "submitted_donor_id"
      ],
      "rows": 155874,
      "table": true,
      "tojson": true
    },
    {
      "name": "pcawg_full",
      "title": "PCAWG Full Sample Identifiers",
      "object": "pcawg_full",
      "class": [
        "data.table",
        "data.frame"
      ],
      "fields": [
        "donor_unique_id",
        "submitter_donor_id",
        "icgc_donor_id",
        "aliquot_id",
        "submitter_specimen_id",
        "icgc_specimen_id",
        "submitter_sample_id",
        "icgc_sample_id"
      ],
      "rows": 7255,
      "table": true,
      "tojson": true
    },
    {
      "name": "pcawg_simple",
      "title": "PCAWG Mutation Related Simplified Sample Identifiers",
      "object": "pcawg_simple",
      "class": [
        "data.table",
        "data.frame"
      ],
      "fields": [
        "tumour_specimen_aliquot_id",
        "normal_specimen_aliquot_id",
        "donor_unique_id",
        "submitted_donor_id",
        "icgc_donor_id",
        "icgc_sample_id",
        "icgc_specimen_id",
        "submitted_specimen_id",
        "submitted_sample_id",
        "tcga_specimen_uuid",
        "tcga_sample_uuid",
        "tcga_donor_uuid"
      ],
      "rows": 2583,
      "table": true,
      "tojson": true
    },
    {
      "name": "tcga",
      "title": "TCGA Case Identifiers",
      "object": "tcga",
      "class": [
        "data.table",
        "data.frame"
      ],
      "fields": [
        "case_id",
        "aliquot_ids",
        "submitter_aliquot_ids",
        "submitter_id",
        "sample_id"
      ],
      "rows": 150849,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "build_annotables",
      "title": "Build Gene Annotation Tables from Ensembl BioMart",
      "topics": [
        "build_annotables"
      ]
    },
    {
      "page": "convert_custom",
      "title": "Convert Identifiers with Custom Database",
      "topics": [
        "convert_custom"
      ]
    },
    {
      "page": "convert_hm_genes",
      "title": "Convert Gene IDs between Ensembl and Hugo Symbol System",
      "topics": [
        "convert_hm_genes"
      ]
    },
    {
      "page": "convert_hm_orthologs",
      "title": "Convert Gene IDs Between Human and Mouse via Orthology",
      "topics": [
        "convert_hm_orthologs"
      ]
    },
    {
      "page": "convert_icgc",
      "title": "Convert ICGC Identifiers",
      "topics": [
        "convert_icgc"
      ]
    },
    {
      "page": "convert_pcawg",
      "title": "Convert PCAWG Identifiers",
      "topics": [
        "convert_pcawg"
      ]
    },
    {
      "page": "convert_tcga",
      "title": "Convert TCGA Identifiers",
      "topics": [
        "convert_tcga"
      ]
    },
    {
      "page": "filter_tcga_barcodes",
      "title": "Filter TCGA Replicate Sample Barcodes",
      "topics": [
        "filter_tcga_barcodes"
      ]
    },
    {
      "page": "icgc",
      "title": "ICGC Sample Identifiers",
      "topics": [
        "icgc"
      ]
    },
    {
      "page": "load_data",
      "title": "Load Data from Local or Remote Zenodo Repository",
      "topics": [
        "load_data"
      ]
    },
    {
      "page": "ls_annotables",
      "title": "List Available Annotation Tables",
      "topics": [
        "ls_annotables"
      ]
    },
    {
      "page": "pair_gdc_samples",
      "title": "Pair Tumor-Normal Samples from GDC Manifest",
      "topics": [
        "pair_gdc_samples"
      ]
    },
    {
      "page": "parse_gdc_file_uuid",
      "title": "Parse Sample ID from GDC Portal File UUID",
      "topics": [
        "parse_gdc_file_uuid"
      ]
    },
    {
      "page": "pcawg_full",
      "title": "PCAWG Full Sample Identifiers",
      "topics": [
        "pcawg_full"
      ]
    },
    {
      "page": "pcawg_simple",
      "title": "PCAWG Mutation Related Simplified Sample Identifiers",
      "topics": [
        "pcawg_simple"
      ]
    },
    {
      "page": "resolve_gene_aliases",
      "title": "Resolve Gene Symbol Aliases",
      "topics": [
        "resolve_gene_aliases"
      ]
    },
    {
      "page": "tcga",
      "title": "TCGA Case Identifiers",
      "topics": [
        "tcga"
      ]
    }
  ],
  "_readme": "https://github.com/ShixiangWang/IDConverter/raw/HEAD/README.md",
  "_rundeps": [
    "askpass",
    "cli",
    "curl",
    "data.table",
    "glue",
    "httr",
    "jsonlite",
    "lifecycle",
    "magrittr",
    "mime",
    "openssl",
    "pillar",
    "pkgconfig",
    "R6",
    "rlang",
    "sys",
    "tibble",
    "utf8",
    "vctrs"
  ],
  "_vignettes": [
    {
      "source": "IDConverter.Rmd",
      "filename": "IDConverter.html",
      "title": "Getting Started with IDConverter",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Overview",
        "ID Conversion",
        "Gene ID Conversion",
        "Gene Annotation Tables"
      ],
      "created": "2026-07-25 05:59:50",
      "modified": "2026-07-25 10:29:00",
      "commits": 2
    }
  ],
  "_score": 4.146128035678238,
  "_indexed": true,
  "_nocasepkg": "idconverter",
  "_universes": [
    "shixiangwang",
    "wanglabcsu"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.4.0",
      "date": "2026-07-25T15:54:10.000Z",
      "distro": "resolute",
      "commit": "4a08cf3c7b293cf79848a291dc85ba42c0701916",
      "fileid": "https://r2.ropensci.org/6fa7a52263511aec45fcb3aac45fb4de0c5ed1bf7765620c74d8e2bdc68849c3",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/shixiangwang/actions/runs/30164332489"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.4.0",
      "date": "2026-07-25T15:54:16.000Z",
      "distro": "resolute",
      "commit": "4a08cf3c7b293cf79848a291dc85ba42c0701916",
      "fileid": "https://r2.ropensci.org/014c0dd3866bb0dba1162ba7bf0757f34f9678be5db8437b6c3925748e29b66b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/shixiangwang/actions/runs/30164332489"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.4.0",
      "date": "2026-07-25T15:53:20.000Z",
      "commit": "4a08cf3c7b293cf79848a291dc85ba42c0701916",
      "fileid": "https://r2.ropensci.org/6f4d77c0c0c64ab3ac76ea03df484e6a28c0cef4e613beb8120e81ce4ca9fd21",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/shixiangwang/actions/runs/30164332489"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.4.0",
      "date": "2026-07-25T15:53:03.000Z",
      "commit": "4a08cf3c7b293cf79848a291dc85ba42c0701916",
      "fileid": "https://r2.ropensci.org/b28f2ea08d53b67a789fdb51eeca823096f0393cbdddc02376e41dffa5a42844",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/shixiangwang/actions/runs/30164332489"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.4.0",
      "date": "2026-07-25T15:54:01.000Z",
      "commit": "4a08cf3c7b293cf79848a291dc85ba42c0701916",
      "fileid": "https://r2.ropensci.org/816eca50120683752b7b77eda72b72f2df2fcb83cb07d383b81f9fab1e3bd759",
      "status": "success",
      "buildurl": "https://github.com/r-universe/shixiangwang/actions/runs/30164332489"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.4.0",
      "date": "2026-07-25T15:52:58.000Z",
      "commit": "4a08cf3c7b293cf79848a291dc85ba42c0701916",
      "fileid": "https://r2.ropensci.org/e10199110fab9f491e2f3e233918dcf15649222f0923a3d0b530935a07a70067",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/shixiangwang/actions/runs/30164332489"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.4.0",
      "date": "2026-07-25T15:53:06.000Z",
      "commit": "4a08cf3c7b293cf79848a291dc85ba42c0701916",
      "fileid": "https://r2.ropensci.org/585293a0f4fc87c0e8fc395d271bf74882bd2a87f014385d8c437862321781ef",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/shixiangwang/actions/runs/30164332489"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "0.4.0",
      "date": "2026-07-25T15:52:53.000Z",
      "commit": "4a08cf3c7b293cf79848a291dc85ba42c0701916",
      "fileid": "https://r2.ropensci.org/b7187fdf3b9438e5816890fac7393c59ca70a69c48f93378392371f1563b6b4a",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/shixiangwang/actions/runs/30164332489"
    }
  ]
}