Package: neopeptides 0.1.0
neopeptides: Calculate and Explore Property Indices of Neopeptides
Includes functions to calculate and explore several property indices for neopeptides, which are abnormal peptides generated from genome.
Authors:
neopeptides_0.1.0.tar.gz
neopeptides_0.1.0.zip(r-4.5)neopeptides_0.1.0.zip(r-4.4)neopeptides_0.1.0.zip(r-4.3)
neopeptides_0.1.0.tgz(r-4.4-any)neopeptides_0.1.0.tgz(r-4.3-any)
neopeptides_0.1.0.tar.gz(r-4.5-noble)neopeptides_0.1.0.tar.gz(r-4.4-noble)
neopeptides_0.1.0.tgz(r-4.4-emscripten)neopeptides_0.1.0.tgz(r-4.3-emscripten)
neopeptides.pdf |neopeptides.html✨
neopeptides/json (API)
| # Install 'neopeptides' in R: |
| install.packages('neopeptides', repos = c('https://shixiangwang.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/shixiangwang/neopeptides/issues
immunotherapyneoantigenpeptides
Last updated 3 years agofrom:6aff6c735d
Exports:%>%calc_dissimilaritycalc_geometric_meancalc_harmonic_meancalc_iedb_scorefind_pathinstall_databaseset_blast_path
Dependencies:askpassBiocGenericsBiostringsclicrayoncurldata.tableGenomeInfoDbGenomeInfoDbDataglueGPArotationhttrIRangesjsonlitelatticelifecyclemagrittrmimemnormtnlmeopensslPeptidespsychpurrrR.methodsS3R.ooR.utilsR6RcpprlangS4VectorsstringistringrsysUCSC.utilsvctrsXVectoryamlzlibbioc
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Calculate Dissimilarity Value to Reference Proteome for Peptides | calc_dissimilarity |
| Calculate the Geometric Mean | calc_geometric_mean |
| Calculate the Harmonic Mean | calc_harmonic_mean |
| Calculate IEDB Score for Peptides | calc_iedb_score |
| Find Entry Path from Environment Variable or Config file | find_path |
| Install IEDB and Proteome Reference Database | install_database |
| Set Path to Blast | set_blast_path |
