Package: neopeptides 0.1.0

neopeptides: Calculate and Explore Property Indices of Neopeptides

Includes functions to calculate and explore several property indices for neopeptides, which are abnormal peptides generated from genome.

Authors:Shixiang Wang [aut, cre]

neopeptides_0.1.0.tar.gz
neopeptides_0.1.0.zip(r-4.5)neopeptides_0.1.0.zip(r-4.4)neopeptides_0.1.0.zip(r-4.3)
neopeptides_0.1.0.tgz(r-4.4-any)neopeptides_0.1.0.tgz(r-4.3-any)
neopeptides_0.1.0.tar.gz(r-4.5-noble)neopeptides_0.1.0.tar.gz(r-4.4-noble)
neopeptides_0.1.0.tgz(r-4.4-emscripten)neopeptides_0.1.0.tgz(r-4.3-emscripten)
neopeptides.pdf |neopeptides.html✨
neopeptides/json (API)

# Install 'neopeptides' in R:
install.packages('neopeptides', repos = c('https://shixiangwang.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/shixiangwang/neopeptides/issues

On CRAN:

somaticmutationimmunooncologyalignmentimmunotherapyneoantigenpeptides

1.70 score 1 stars 1 scripts 8 exports 40 dependencies

Last updated 3 years agofrom:6aff6c735d. Checks:OK: 1 NOTE: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 31 2024
R-4.5-winNOTEOct 31 2024
R-4.5-linuxNOTEOct 31 2024
R-4.4-winNOTEOct 31 2024
R-4.4-macNOTEOct 31 2024
R-4.3-winNOTEOct 31 2024
R-4.3-macNOTEOct 31 2024

Exports:%>%calc_dissimilaritycalc_geometric_meancalc_harmonic_meancalc_iedb_scorefind_pathinstall_databaseset_blast_path

Dependencies:askpassBiocGenericsBiostringsclicrayoncurldata.tablegenericsGenomeInfoDbGenomeInfoDbDataglueGPArotationhttrIRangesjsonlitelatticelifecyclemagrittrmimemnormtnlmeopensslPeptidespsychpurrrR.methodsS3R.ooR.utilsR6RcpprlangS4VectorsstringistringrsysUCSC.utilsvctrsXVectoryamlzlibbioc