Package: neopeptides 0.1.0
neopeptides: Calculate and Explore Property Indices of Neopeptides
Includes functions to calculate and explore several property indices for neopeptides, which are abnormal peptides generated from genome.
Authors:
neopeptides_0.1.0.tar.gz
neopeptides_0.1.0.zip(r-4.5)neopeptides_0.1.0.zip(r-4.4)neopeptides_0.1.0.zip(r-4.3)
neopeptides_0.1.0.tgz(r-4.4-any)neopeptides_0.1.0.tgz(r-4.3-any)
neopeptides_0.1.0.tar.gz(r-4.5-noble)neopeptides_0.1.0.tar.gz(r-4.4-noble)
neopeptides_0.1.0.tgz(r-4.4-emscripten)neopeptides_0.1.0.tgz(r-4.3-emscripten)
neopeptides.pdf |neopeptides.html✨
neopeptides/json (API)
# Install 'neopeptides' in R: |
install.packages('neopeptides', repos = c('https://shixiangwang.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/shixiangwang/neopeptides/issues
somaticmutationimmunooncologyalignmentimmunotherapyneoantigenpeptides
Last updated 3 years agofrom:6aff6c735d. Checks:OK: 1 NOTE: 6. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 30 2024 |
R-4.5-win | NOTE | Nov 30 2024 |
R-4.5-linux | NOTE | Nov 30 2024 |
R-4.4-win | NOTE | Nov 30 2024 |
R-4.4-mac | NOTE | Nov 30 2024 |
R-4.3-win | NOTE | Nov 30 2024 |
R-4.3-mac | NOTE | Nov 30 2024 |
Exports:%>%calc_dissimilaritycalc_geometric_meancalc_harmonic_meancalc_iedb_scorefind_pathinstall_databaseset_blast_path
Dependencies:askpassBiocGenericsBiostringsclicrayoncurldata.tablegenericsGenomeInfoDbGenomeInfoDbDataglueGPArotationhttrIRangesjsonlitelatticelifecyclemagrittrmimemnormtnlmeopensslPeptidespsychpurrrR.methodsS3R.ooR.utilsR6RcpprlangS4VectorsstringistringrsysUCSC.utilsvctrsXVectoryamlzlibbioc
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Calculate Dissimilarity Value to Reference Proteome for Peptides | calc_dissimilarity |
Calculate the Geometric Mean | calc_geometric_mean |
Calculate the Harmonic Mean | calc_harmonic_mean |
Calculate IEDB Score for Peptides | calc_iedb_score |
Find Entry Path from Environment Variable or Config file | find_path |
Install IEDB and Proteome Reference Database | install_database |
Set Path to Blast | set_blast_path |