Package: CNVMotif 0.1.0

CNVMotif: Explore, Analyze and Visualize Catalogs and Patterns of Copy Number Variation in Cancer Genomics

Provides functionality for exploring, analyzing and visualizing the copy number variation (CNV) motifs in cancer genomics.

Authors:Shixiang Wang [aut, cre]

CNVMotif_0.1.0.tar.gz
CNVMotif_0.1.0.zip(r-4.7)CNVMotif_0.1.0.zip(r-4.6)CNVMotif_0.1.0.zip(r-4.5)
CNVMotif_0.1.0.tgz(r-4.6-x86_64)CNVMotif_0.1.0.tgz(r-4.6-arm64)CNVMotif_0.1.0.tgz(r-4.5-x86_64)CNVMotif_0.1.0.tgz(r-4.5-arm64)
CNVMotif_0.1.0.tar.gz(r-4.7-arm64)CNVMotif_0.1.0.tar.gz(r-4.7-x86_64)CNVMotif_0.1.0.tar.gz(r-4.6-arm64)CNVMotif_0.1.0.tar.gz(r-4.6-x86_64)
CNVMotif_0.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
CNVMotif/json (API)

# Install 'CNVMotif' in R:
install.packages('CNVMotif', repos = c('https://shixiangwang.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/shixiangwang/cnvmotif/issues

Uses libs:
  • c++– GNU Standard C++ Library v3

On CRAN:

Conda:

sigminercpp

1.70 score 1 stars 3 scripts 13 exports 128 dependencies

Last updated from:ad11585b11. Checks:11 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64NOTE221
linux-devel-x86_64NOTE240
source / vignettesOK252
linux-release-arm64NOTE232
linux-release-x86_64NOTE254
macos-release-arm64NOTE221
macos-release-x86_64NOTE417
macos-oldrel-arm64NOTE192
macos-oldrel-x86_64NOTE233
windows-develNOTE269
windows-releaseNOTE204
windows-oldrelNOTE216
wasm-releaseOK195

Exports:%>%build_sub_matrixcluster_pamcluster_pam_estimatecluster_splitdo_msaextract_seqsgeom_logo2get_score_matrixggseqlogo2show_seq_logoshow_seq_shapetransform_seqs

Dependencies:abindbackportsbase64encBiocGenericsBiostringsbootbroombslibcachemcarcarDatacliclustercolorspacecorrplotcowplotcpp11crayoncrosstalkdata.tabledendextendDerivdigestdoBydplyrDTellipseemmeansestimabilityevaluatefactoextraFactoMineRfarverfastmapflashClustfontawesomeforecastFormulafracdifffsgenericsggplot2ggpubrggrepelggsciggseqlogoggsignifgluegridExtragtablehighrhtmltoolshtmlwidgetsIRangesisobandjquerylibjsonliteknitrlabelinglaterlatticelazyevalleapslifecyclelme4lmtestmagrittrMASSMatrixMatrixModelsmemoisemgcvmicrobenchmarkmimeminqamodelrmsamultcompViewmvtnormnlmenloptrnnetnumDerivotelpbkrtestpillarpkgconfigpolynompromisespurrrquantregR6rappdirsrbibutilsRColorBrewerRcppRcppArmadilloRcppEigenRdpackreformulasrlangrmarkdownrstatixS4VectorsS7sassscalesscatterplot3dSeqinfoSparseMstringistringrsurvivaltibbletidyrtidyselecttimeDatetinytexurcautf8vctrsviridisviridisLitewithrxfunXVectoryamlzoo