Package: CNVMotif 0.1.0

CNVMotif: Explore, Analyze and Visualize Catalogs and Patterns of Copy Number Variation in Cancer Genomics

Provides functionality for exploring, analyzing and visualizing the copy number variation (CNV) motifs in cancer genomics.

Authors:Shixiang Wang [aut, cre]

CNVMotif_0.1.0.tar.gz
CNVMotif_0.1.0.zip(r-4.5)CNVMotif_0.1.0.zip(r-4.4)CNVMotif_0.1.0.zip(r-4.3)
CNVMotif_0.1.0.tgz(r-4.4-arm64)CNVMotif_0.1.0.tgz(r-4.4-x86_64)CNVMotif_0.1.0.tgz(r-4.3-arm64)CNVMotif_0.1.0.tgz(r-4.3-x86_64)
CNVMotif_0.1.0.tar.gz(r-4.5-noble)CNVMotif_0.1.0.tar.gz(r-4.4-noble)
CNVMotif_0.1.0.tgz(r-4.4-emscripten)CNVMotif_0.1.0.tgz(r-4.3-emscripten)
CNVMotif.pdf |CNVMotif.html
CNVMotif/json (API)

# Install CNVMotif in R:
install.packages('CNVMotif', repos = c('https://shixiangwang.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/shixiangwang/cnvmotif/issues

Uses libs:
  • c++– GNU Standard C++ Library v3

On CRAN:

sigminer

13 exports 1 stars 0.09 score 137 dependencies

Last updated 2 years agofrom:ad11585b11b89d7970552f9a805c0b5db9d669c3

Exports:%>%build_sub_matrixcluster_pamcluster_pam_estimatecluster_splitdo_msaextract_seqsgeom_logo2get_score_matrixggseqlogo2show_seq_logoshow_seq_shapetransform_seqs

Dependencies:abindaskpassbackportsbase64encBiocGenericsBiostringsbootbriobroombslibcachemcallrcarcarDatacliclustercolorspacecorrplotcowplotcpp11crayoncrosstalkcurldata.tabledendextenddescdiffobjdigestdplyrDTellipseemmeansestimabilityevaluatefactoextraFactoMineRfansifarverfastmapflashClustfontawesomefsgenericsGenomeInfoDbGenomeInfoDbDataggplot2ggpubrggrepelggsciggseqlogoggsignifgluegridExtragtablehighrhtmltoolshtmlwidgetshttpuvhttrIRangesisobandjquerylibjsonliteknitrlabelinglaterlatticelazyevalleapslifecyclelme4magrittrMASSMatrixMatrixModelsmemoisemgcvmimeminqamsamultcompViewmunsellmvtnormnlmenloptrnnetnumDerivopensslpbkrtestpillarpkgbuildpkgconfigpkgloadplyrpolynompraiseprocessxpromisespspurrrquantregR6rappdirsRColorBrewerRcppRcppEigenrematch2reshape2rlangrmarkdownrprojrootrstatixS4Vectorssassscalesscatterplot3dSparseMstringistringrsurvivalsystestthattibbletidyrtidyselecttinytexUCSC.utilsutf8vctrsviridisviridisLitewaldowithrxfunXVectoryamlzlibbioc