Package: CNVMotif 0.1.0

CNVMotif: Explore, Analyze and Visualize Catalogs and Patterns of Copy Number Variation in Cancer Genomics

Provides functionality for exploring, analyzing and visualizing the copy number variation (CNV) motifs in cancer genomics.

Authors:Shixiang Wang [aut, cre]

CNVMotif_0.1.0.tar.gz
CNVMotif_0.1.0.zip(r-4.5)CNVMotif_0.1.0.zip(r-4.4)
CNVMotif_0.1.0.tgz(r-4.5-x86_64)CNVMotif_0.1.0.tgz(r-4.5-arm64)CNVMotif_0.1.0.tgz(r-4.4-x86_64)CNVMotif_0.1.0.tgz(r-4.4-arm64)CNVMotif_0.1.0.tgz(r-4.3-x86_64)CNVMotif_0.1.0.tgz(r-4.3-arm64)
CNVMotif_0.1.0.tar.gz(r-4.5-noble)CNVMotif_0.1.0.tar.gz(r-4.4-noble)
CNVMotif_0.1.0.tgz(r-4.4-emscripten)
CNVMotif.pdf |CNVMotif.html✨
CNVMotif/json (API)

# Install 'CNVMotif' in R:
install.packages('CNVMotif', repos = c('https://shixiangwang.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/shixiangwang/cnvmotif/issues

Uses libs:
  • c++– GNU Standard C++ Library v3

On CRAN:

Conda:

sigminercpp

1.70 score 1 stars 3 scripts 13 exports 131 dependencies

Last updated 3 years agofrom:ad11585b11. Checks:1 OK, 9 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 17 2025
R-4.5-win-x86_64NOTEFeb 17 2025
R-4.5-mac-x86_64NOTEFeb 17 2025
R-4.5-mac-aarch64NOTEFeb 17 2025
R-4.5-linux-x86_64NOTEFeb 17 2025
R-4.4-win-x86_64NOTEFeb 17 2025
R-4.4-mac-x86_64NOTEFeb 17 2025
R-4.4-mac-aarch64NOTEFeb 17 2025
R-4.3-mac-x86_64NOTEFeb 17 2025
R-4.3-mac-aarch64NOTEFeb 17 2025

Exports:%>%build_sub_matrixcluster_pamcluster_pam_estimatecluster_splitdo_msaextract_seqsgeom_logo2get_score_matrixggseqlogo2show_seq_logoshow_seq_shapetransform_seqs

Dependencies:abindaskpassbackportsbase64encBiocGenericsBiostringsbootbroombslibcachemcarcarDatacliclustercolorspacecorrplotcowplotcpp11crayoncrosstalkcurldata.tabledendextendDerivdigestdoBydplyrDTellipseemmeansestimabilityevaluatefactoextraFactoMineRfansifarverfastmapflashClustfontawesomeFormulafsgenericsGenomeInfoDbGenomeInfoDbDataggplot2ggpubrggrepelggsciggseqlogoggsignifgluegridExtragtablehighrhtmltoolshtmlwidgetshttpuvhttrIRangesisobandjquerylibjsonliteknitrlabelinglaterlatticelazyevalleapslifecyclelme4magrittrMASSMatrixMatrixModelsmemoisemgcvmicrobenchmarkmimeminqamodelrmsamultcompViewmunsellmvtnormnlmenloptrnnetnumDerivopensslpbkrtestpillarpkgconfigplyrpolynompromisespurrrquantregR6rappdirsrbibutilsRColorBrewerRcppRcppEigenRdpackreformulasreshape2rlangrmarkdownrstatixS4Vectorssassscalesscatterplot3dSparseMstringistringrsurvivalsystibbletidyrtidyselecttinytexUCSC.utilsutf8vctrsviridisviridisLitewithrxfunXVectoryaml