# -------------------------------------------- # CITATION file created with {cffr} R package # See also: https://docs.ropensci.org/cffr/ # -------------------------------------------- cff-version: 1.2.0 message: 'To cite package "sigminer" in publications use:' type: software license: MIT title: 'sigminer: Extract, Analyze and Visualize Mutational Signatures for Genomic Variations' version: 2.3.2 identifiers: - type: doi value: 10.32614/CRAN.package.sigminer - type: url value: https://shixiangwang.github.io/sigminer-book/ abstract: Genomic alterations including single nucleotide substitution, copy number alteration, etc. are the major force for cancer initialization and development. Due to the specificity of molecular lesions caused by genomic alterations, we can generate characteristic alteration spectra, called 'signature' (Wang, Shixiang, et al. (2021) & Alexandrov, Ludmil B., et al. (2020) & Steele Christopher D., et al. (2022) ). This package helps users to extract, analyze and visualize signatures from genomic alteration records, thus providing new insight into cancer study. authors: - family-names: Wang given-names: Shixiang email: w_shixiang@163.com orcid: https://orcid.org/0000-0001-9855-7357 - family-names: Tao given-names: Ziyu email: taozy@shanghaitech.edu.cn orcid: https://orcid.org/0000-0003-3272-1227 - family-names: Li given-names: Huimin email: lihm@shanghaitech.edu.cn orcid: https://orcid.org/0000-0003-1683-9057 - family-names: Wu given-names: Tao email: wutao2@shanghaitech.edu.cn orcid: https://orcid.org/0000-0002-8999-9628 - family-names: Liu given-names: Xue-Song orcid: https://orcid.org/0000-0002-7736-0077 preferred-citation: type: article title: Copy number signature analysis tool and its application in prostate cancer reveals distinct mutational processes and clinical outcomes authors: - family-names: Wang given-names: Shixiang email: w_shixiang@163.com orcid: https://orcid.org/0000-0001-9855-7357 - family-names: Li given-names: Huimin email: lihm@shanghaitech.edu.cn orcid: https://orcid.org/0000-0003-1683-9057 - family-names: Song given-names: Minfang - family-names: He given-names: Zaoke - family-names: Wu given-names: Tao email: wutao2@shanghaitech.edu.cn orcid: https://orcid.org/0000-0002-8999-9628 - family-names: Wang given-names: Xuan - family-names: Tao given-names: Ziyu email: taozy@shanghaitech.edu.cn orcid: https://orcid.org/0000-0003-3272-1227 - family-names: Wu given-names: Kai - family-names: Liu given-names: Xue-Song orcid: https://orcid.org/0000-0002-7736-0077 journal: Plos Genetics year: '2021' volume: '17' issue: '5' url: https://doi.org/10.1371/journal.pgen.1009557 start: e1009557 repository: https://shixiangwang.r-universe.dev repository-code: https://github.com/ShixiangWang/sigminer commit: 9455b46c84ac47bbb35d77aed70e74875718c18f url: https://shixiangwang.github.io/sigminer/ contact: - family-names: Wang given-names: Shixiang email: w_shixiang@163.com orcid: https://orcid.org/0000-0001-9855-7357