Package 'rsra'

Title: Query and Download SRA Files from NCBI
Description: Query and download SRA files from NCBI with 'wget'.
Authors: Shixiang Wang [aut, cre] (ORCID: <https://orcid.org/0000-0001-9855-7357>)
Maintainer: Shixiang Wang <[email protected]>
License: GPL (>= 3)
Version: 0.2.2
Built: 2026-05-08 07:35:35 UTC
Source: https://github.com/ShixiangWang/rsra

Help Index

Query and download SRA files from NCBI

Description

Query and download SRA files from NCBI

Usage

rsra(
  idList,
  prefetch = NULL,
  outdir = getwd(),
  progress = TRUE,
  location = c("AWS", "NCBI"),
  opts = "-r yes -C yes"
)

Arguments

idList

a list of cases to download.
prefetch

if not NULL, should be the path to the prefetch program.
outdir

output directory, default is working directory.
progress

if TRUE, show 'wget' download progress.
location

one of "AWS" or "NCBI" for download server. "GCAP" is not available due to its limit.
opts

options work with prefetch (expects -p) when prefetch is not NULL.

Value

Nothing