# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "copynumber" in publications use:'
type: software
license: Artistic-2.0
title: 'copynumber: Segmentation of single- and multi-track copy number data by penalized
  least squares regression (with hg38 and mm10).'
version: 1.29.0.9000
identifiers:
- type: doi
  value: 10.32614/CRAN.package.copynumber
abstract: Penalized least squares regression is applied to fit piecewise constant
  curves to copy number data to locate genomic regions of constant copy number. Procedures
  are available for individual segmentation of each sample, joint segmentation of
  several samples and joint segmentation of the two data tracks from SNP-arrays. Several
  plotting functions are available for visualization of the data and the segmentation
  results.
authors:
- family-names: Nilsen
  given-names: Gro
  email: gronilse@ifi.uio.no
- family-names: Liestoel
  given-names: Knut
- family-names: Lingjaerde.
  given-names: Ole Christian
preferred-citation:
  type: manual
  title: 'copynumber: Segmentation of single- and multi-track copy number data by
    penalized least squares regression'
  authors:
  - family-names: Nilsen
    given-names: Gro
    email: gronilse@ifi.uio.no
  - family-names: Liestol
    given-names: Knut
  - family-names: Lingjaerde
    given-names: Ole Christian
  notes: R package version 1.29.0.9000
repository: https://shixiangwang.r-universe.dev
repository-code: https://github.com/igordot/copynumber
commit: 2e31d59f558d5e3e44215da2f612707791e3f030
url: https://github.com/igordot/copynumber
contact:
- family-names: Nilsen
  given-names: Gro
  email: gronilse@ifi.uio.no
references:
- type: article
  title: 'Copynumber: Efficient algorithms for single- and multi-track copy number
    segmentation.'
  authors:
  - family-names: Nilsen
    given-names: G.
  - family-names: Liestol
    given-names: K.
  - family-names: Van Loo
    given-names: P.
  - family-names: Vollan
    given-names: H.K.M.
  - family-names: Eide
    given-names: M.B.
  - family-names: Rueda
    given-names: O.
  - family-names: Chin
    given-names: S.F.
  - family-names: Russell
    given-names: R.
  - family-names: Baumbusch
    given-names: L.O.
  - family-names: Caldas
    given-names: C.
  - family-names: Borresen-Dale
    given-names: A.L.
  - family-names: Lingjaerde
    given-names: O.C.
  journal: BMC Genomics
  volume: '13'
  issue: '1'
  year: '2012'
  start: '591'