Package: copynumber
Title: Segmentation of single- and multi-track copy number data by
        penalized least squares regression (with hg38 and mm10).
Version: 1.29.0.9000
Author: Gro Nilsen, Knut Liestoel and Ole Christian Lingjaerde.
Maintainer: Gro Nilsen <gronilse@ifi.uio.no>
Description: Penalized least squares regression is applied to fit
        piecewise constant curves to copy number data to locate genomic
        regions of constant copy number. Procedures are available for
        individual segmentation of each sample, joint segmentation of
        several samples and joint segmentation of the two data tracks
        from SNP-arrays. Several plotting functions are available for
        visualization of the data and the segmentation results.
License: Artistic-2.0
LazyData: yes
BuildResaveData: best
Depends: R (>= 3.5.0), BiocGenerics
Imports: S4Vectors, IRanges, GenomicRanges
biocViews: aCGH, SNP, CopyNumberVariation, Genetics, Visualization
URL: https://github.com/igordot/copynumber
RoxygenNote: 7.1.1
Repository: https://shixiangwang.r-universe.dev
Date/Publication: 2023-04-10 03:13:38 UTC
RemoteUrl: https://github.com/ShixiangWang/copynumber
RemoteRef: HEAD
RemoteSha: 2e31d59f558d5e3e44215da2f612707791e3f030
NeedsCompilation: no
Packaged: 2026-07-04 14:51:38 UTC; root